Detailed information of component protein


Summary

Component ID T6CP015190
Component protein type TssH
T6SS ID (Type) T6SS01197 experimental (Type i2)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (908 a.a.); Nucleotide sequence (2724 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS17330
Coordinate (Strand) 173424..176147 (-)
NCBI ID WP_006494515.1
RefSeq NZ_HG938371
Uniprot ID UPI0002343BD9
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.3e-38 623..787
AAA_lid_9 PF17871.3 9.7e-30 385..477
ClpB_D2-small PF10431.11 1.6e-12 794..866
AAA PF00004.31 3.3e-09 245..357
Clp_N PF02861.22 3.8e-06 25..74
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-907 MTPRDTTHLLRRLNPHCAKALEAAVSLCQTRLADEITVEHWLLKLIEAGDGDIPAILRHYGIDIDTVWDALLASIEHLPRNLRGKPALSPQLATLLQDAWVRAASETDDATIRSGDLLQAIVDRPHVLRTQNAWPLLSVSSTQIQRVLPRLAHRSCERARPEDIEAEADDHPIDPAAGQTLESAAPVSAAPLAPRRTTDGSALSRFAIDLTDKARRGAIDPVFGRDREIQQMVDVLARRRKNNPILVGEPGVGKTALVEGLALRVAEASVPNVIRDVRILTLDLGLLQAGAGVKGEFEQRLKNVIDEVQSSPEPILLFIDEAHTLIGAGNAAGGADAANLLKPALARGELRTIAATTWSEYKEFFERDAALERRFQIIKVDEPDDDAACLMLRGLKRRYAEYHNVHIRDEALIAAVKLSRRYIPARQLPDKAVDLIDTAAARVRIGLESPPAELQRARATVSALELELATLDADAQAGIDEVAPRRVTLEHALSDARNILTGLQARHVGELELVRLVHQHRAEIAEGGSVSGHGQLDDVKRRLADRQGKAPLISVDVDAAVIARVVAEWTGVPVGNLVEDELLSLLNLEQQLAARVVAQDDALAALAESLRTAKAGLKHEHAPLGVFLLAGPSGVGKTETALALADLLFGGEAALTTINMSEYQEAHTVSQLKGSPPGYIGYGRGGILTEAVRQRPYSVVLLDEVEKAHRDVLDMFYQVFDRGMMRDGEGREIDFRHCVILMTSNLGSARIDEMTADDPQISQAALLESIHPELVAHFQPALLARFQSLVYRPLDAAALASIVRLKLSKVADRLRRQHGIELACDESLIDAMAELCLARESGARNVDAFLNQRILPNVSRELLARMATGHAPERIVLSSSSEASVTIDFIDRSHVVAGTAEPTRTTA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9363 - -


  Protein sequence: 908 a.a.    

>T6CP015190 NZ_HG938371:c176147-173424 [Burkholderia cenocepacia H111] [TssH]
MTPRDTTHLLRRLNPHCAKALEAAVSLCQTRLADEITVEHWLLKLIEAGDGDIPAILRHYGIDIDTVWDALLASIEHLPR
NLRGKPALSPQLATLLQDAWVRAASETDDATIRSGDLLQAIVDRPHVLRTQNAWPLLSVSSTQIQRVLPRLAHRSCERAR
PEDIEAEADDHPIDPAAGQTLESAAPVSAAPLAPRRTTDGSALSRFAIDLTDKARRGAIDPVFGRDREIQQMVDVLARRR
KNNPILVGEPGVGKTALVEGLALRVAEASVPNVIRDVRILTLDLGLLQAGAGVKGEFEQRLKNVIDEVQSSPEPILLFID
EAHTLIGAGNAAGGADAANLLKPALARGELRTIAATTWSEYKEFFERDAALERRFQIIKVDEPDDDAACLMLRGLKRRYA
EYHNVHIRDEALIAAVKLSRRYIPARQLPDKAVDLIDTAAARVRIGLESPPAELQRARATVSALELELATLDADAQAGID
EVAPRRVTLEHALSDARNILTGLQARHVGELELVRLVHQHRAEIAEGGSVSGHGQLDDVKRRLADRQGKAPLISVDVDAA
VIARVVAEWTGVPVGNLVEDELLSLLNLEQQLAARVVAQDDALAALAESLRTAKAGLKHEHAPLGVFLLAGPSGVGKTET
ALALADLLFGGEAALTTINMSEYQEAHTVSQLKGSPPGYIGYGRGGILTEAVRQRPYSVVLLDEVEKAHRDVLDMFYQVF
DRGMMRDGEGREIDFRHCVILMTSNLGSARIDEMTADDPQISQAALLESIHPELVAHFQPALLARFQSLVYRPLDAAALA
SIVRLKLSKVADRLRRQHGIELACDESLIDAMAELCLARESGARNVDAFLNQRILPNVSRELLARMATGHAPERIVLSSS
SEASVTIDFIDRSHVVAGTAEPTRTTA*

  Nucleotide sequence: 2724 bp    

>T6CP015190 NZ_HG938371:c176147-173424 [Burkholderia cenocepacia H111] [TssH]
ATGACTCCGCGCGACACGACCCACCTGCTCCGTCGACTCAATCCGCACTGCGCGAAAGCGCTCGAAGCGGCCGTGAGCTT
ATGCCAGACGCGTCTCGCGGACGAGATCACCGTCGAGCACTGGCTGCTGAAACTGATCGAGGCCGGCGACGGAGACATCC
CCGCGATCCTGCGTCACTACGGCATCGACATCGACACCGTCTGGGATGCGCTGCTCGCGTCGATCGAGCATCTTCCACGC
AATCTTCGGGGCAAGCCGGCCCTGTCCCCGCAACTGGCGACGCTGCTGCAGGACGCATGGGTGCGCGCGGCGTCCGAGAC
CGACGATGCGACCATCCGGTCCGGCGACCTGCTGCAGGCGATCGTCGATCGACCCCATGTACTGCGGACACAAAACGCGT
GGCCTCTGTTGTCCGTCAGCAGCACGCAGATCCAGCGCGTCCTGCCACGCCTGGCCCATCGTTCGTGCGAGCGCGCGCGA
CCGGAGGATATCGAAGCCGAAGCGGACGATCATCCGATCGATCCTGCAGCCGGTCAAACGCTGGAATCGGCGGCACCCGT
CTCGGCAGCACCGCTCGCGCCCCGGCGCACCACGGACGGCAGCGCCCTGTCCCGCTTCGCGATCGATCTGACCGACAAGG
CTCGACGCGGCGCGATCGATCCGGTGTTCGGCCGCGATCGCGAAATCCAGCAGATGGTCGACGTGCTCGCGCGTCGGCGC
AAGAACAATCCGATCCTCGTCGGCGAGCCGGGCGTCGGCAAAACCGCGCTCGTCGAAGGCCTCGCGCTGCGCGTCGCCGA
GGCAAGCGTCCCGAACGTGATTCGCGACGTGCGCATCCTGACACTCGATTTGGGGCTGCTGCAGGCCGGCGCCGGGGTGA
AGGGGGAATTCGAGCAACGCCTGAAGAACGTCATCGACGAGGTTCAGTCCTCACCCGAGCCGATCCTGCTTTTCATCGAC
GAAGCGCACACGTTGATCGGCGCGGGCAACGCCGCCGGCGGCGCCGACGCCGCGAACCTGCTCAAGCCGGCGCTCGCGCG
CGGCGAGTTGCGCACGATCGCCGCAACGACATGGTCGGAGTACAAGGAATTCTTCGAGCGCGACGCCGCCCTCGAGCGCC
GCTTCCAGATCATCAAGGTGGACGAACCCGACGACGATGCGGCGTGCCTGATGTTACGAGGCCTGAAGCGCCGCTATGCG
GAGTATCACAACGTGCACATTCGGGATGAGGCGCTGATCGCGGCGGTGAAACTCTCGCGGCGCTATATCCCCGCGCGGCA
ACTGCCGGACAAGGCAGTCGACCTGATCGATACTGCAGCCGCGCGAGTGCGAATCGGACTTGAATCGCCGCCAGCGGAAC
TGCAGCGCGCACGCGCCACCGTCTCCGCCCTCGAACTCGAACTGGCGACGCTCGACGCGGACGCGCAGGCGGGTATCGAC
GAGGTTGCGCCCCGGCGCGTGACGCTGGAGCACGCGCTTTCCGACGCGCGGAACATCCTGACCGGCCTGCAGGCGCGCCA
CGTCGGTGAACTCGAGCTGGTCCGCCTGGTTCACCAGCATCGAGCCGAGATCGCCGAAGGCGGCTCGGTGTCCGGCCACG
GCCAGCTCGATGACGTCAAACGCCGACTGGCCGACCGGCAAGGCAAGGCACCGTTGATCTCGGTCGATGTCGACGCGGCG
GTCATCGCACGTGTCGTCGCGGAATGGACAGGCGTGCCGGTCGGTAACCTCGTCGAAGACGAACTGCTGAGCCTGCTGAA
TCTCGAACAGCAACTGGCCGCGCGCGTGGTCGCGCAAGACGATGCGCTGGCCGCGCTCGCGGAGAGCCTGCGCACCGCGA
AGGCAGGCCTCAAGCATGAACATGCGCCACTCGGCGTCTTTCTGCTCGCAGGGCCGTCGGGCGTCGGCAAGACCGAAACG
GCGCTGGCCCTGGCCGACCTGCTGTTCGGCGGCGAGGCCGCACTCACGACGATCAACATGTCGGAATATCAGGAAGCACA
CACGGTGTCGCAACTGAAAGGGTCGCCACCGGGCTATATCGGCTACGGCCGCGGCGGCATCCTGACCGAAGCCGTGCGAC
AGCGGCCGTACAGCGTCGTGCTGCTCGATGAAGTCGAAAAGGCCCACCGCGACGTGCTCGACATGTTCTATCAGGTGTTC
GACCGCGGCATGATGCGCGACGGCGAAGGACGCGAGATCGACTTCCGCCATTGCGTGATTCTGATGACGTCCAATCTCGG
CAGCGCACGCATCGACGAGATGACCGCCGACGATCCGCAGATTTCCCAGGCGGCGTTGCTCGAGTCGATCCACCCGGAGC
TCGTGGCCCACTTCCAGCCGGCCCTGCTCGCGCGCTTCCAGTCGCTCGTCTATCGGCCGCTCGATGCCGCCGCACTCGCG
TCGATCGTGCGACTCAAGCTGTCGAAGGTCGCCGACCGCCTGCGCCGGCAACACGGCATCGAGCTGGCATGCGACGAGTC
ATTGATCGACGCGATGGCCGAGCTTTGCCTCGCGCGCGAGTCCGGTGCGCGCAACGTCGATGCATTCCTCAACCAGCGGA
TTCTGCCGAACGTGTCGCGTGAACTGCTTGCGCGGATGGCTACCGGGCACGCACCCGAGAGGATCGTGCTGTCGAGCTCA
TCCGAAGCCAGCGTGACGATCGATTTCATCGACCGGAGCCACGTCGTCGCGGGCACGGCGGAGCCGACACGCACGACCGC
GTAA