Detailed information of component protein


Summary

Component ID T6CP015189
Component protein type TssE
T6SS ID (Type) T6SS01197 experimental (Type i2)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (142 a.a.); Nucleotide sequence (426 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) I35_RS17325
Coordinate (Strand) 172983..173408 (-)
NCBI ID WP_043204613.1
RefSeq NZ_HG938371
Uniprot ID UPI0005B9DD78
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 9.4e-13 32..114

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-141 MQARPSLHDMLLGQICGDPLDAYDDRTLECMSVQQNVQRILNSRAGALKHLPDYGLPDLTNIYKALPASAHMLKQQMEATLLKYEPRIRSIDVAILENDDPGVLVSFEMTCHLKKAGLVRFGTYFEPPGRMWLKRRSAGHD



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9551 - -



  Protein sequence: 142 a.a.    

>T6CP015189 NZ_HG938371:c173408-172983 [Burkholderia cenocepacia H111] [TssE]
MQARPSLHDMLLGQICGDPLDAYDDRTLECMSVQQNVQRILNSRAGALKHLPDYGLPDLTNIYKALPASAHMLKQQMEAT
LLKYEPRIRSIDVAILENDDPGVLVSFEMTCHLKKAGLVRFGTYFEPPGRMWLKRRSAGHD*

  Nucleotide sequence: 426 bp    

>T6CP015189 NZ_HG938371:c173408-172983 [Burkholderia cenocepacia H111] [TssE]
ATGCAGGCGCGTCCCTCTCTCCATGACATGCTGCTCGGCCAGATCTGCGGCGACCCGCTCGATGCTTACGACGACCGGAC
ACTCGAGTGCATGAGCGTTCAGCAGAATGTGCAGCGCATCCTGAACTCGCGTGCCGGCGCGCTGAAGCATCTGCCGGACT
ATGGGCTGCCGGATCTGACGAACATCTACAAGGCGCTGCCCGCGTCAGCCCACATGCTCAAGCAGCAGATGGAGGCGACG
CTCCTGAAATATGAGCCCCGCATCCGCTCCATCGACGTCGCCATCCTCGAAAATGACGATCCTGGCGTGCTGGTGAGTTT
TGAAATGACGTGCCATCTGAAGAAGGCCGGACTCGTGCGGTTCGGTACGTATTTCGAGCCTCCCGGGCGCATGTGGCTGA
AACGCCGGAGTGCGGGGCACGATTAA