Detailed information of component protein
Summary
| Component ID | T6CP015189 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01197  (Type i2) |
| Strain | Burkholderia cenocepacia H111 |
| Replicon | chromosome |
| Sequence | Protein sequence (142 a.a.); Nucleotide sequence (426 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | I35_RS17325 |
| Coordinate (Strand) | 172983..173408 (-) |
| NCBI ID | WP_043204613.1 |
| RefSeq | NZ_HG938371 |
| Uniprot ID | UPI0005B9DD78 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 9.4e-13 | 32..114 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-141 | MQARPSLHDMLLGQICGDPLDAYDDRTLECMSVQQNVQRILNSRAGALKHLPDYGLPDLTNIYKALPASAHMLKQQMEATLLKYEPRIRSIDVAILENDDPGVLVSFEMTCHLKKAGLVRFGTYFEPPGRMWLKRRSAGHD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9551 | - | - |
Protein sequence: 142 a.a.
>T6CP015189 NZ_HG938371:c173408-172983 [Burkholderia cenocepacia H111] [TssE]
MQARPSLHDMLLGQICGDPLDAYDDRTLECMSVQQNVQRILNSRAGALKHLPDYGLPDLTNIYKALPASAHMLKQQMEAT
LLKYEPRIRSIDVAILENDDPGVLVSFEMTCHLKKAGLVRFGTYFEPPGRMWLKRRSAGHD*
MQARPSLHDMLLGQICGDPLDAYDDRTLECMSVQQNVQRILNSRAGALKHLPDYGLPDLTNIYKALPASAHMLKQQMEAT
LLKYEPRIRSIDVAILENDDPGVLVSFEMTCHLKKAGLVRFGTYFEPPGRMWLKRRSAGHD*
Nucleotide sequence: 426 bp
>T6CP015189 NZ_HG938371:c173408-172983 [Burkholderia cenocepacia H111] [TssE]
ATGCAGGCGCGTCCCTCTCTCCATGACATGCTGCTCGGCCAGATCTGCGGCGACCCGCTCGATGCTTACGACGACCGGAC
ACTCGAGTGCATGAGCGTTCAGCAGAATGTGCAGCGCATCCTGAACTCGCGTGCCGGCGCGCTGAAGCATCTGCCGGACT
ATGGGCTGCCGGATCTGACGAACATCTACAAGGCGCTGCCCGCGTCAGCCCACATGCTCAAGCAGCAGATGGAGGCGACG
CTCCTGAAATATGAGCCCCGCATCCGCTCCATCGACGTCGCCATCCTCGAAAATGACGATCCTGGCGTGCTGGTGAGTTT
TGAAATGACGTGCCATCTGAAGAAGGCCGGACTCGTGCGGTTCGGTACGTATTTCGAGCCTCCCGGGCGCATGTGGCTGA
AACGCCGGAGTGCGGGGCACGATTAA
ATGCAGGCGCGTCCCTCTCTCCATGACATGCTGCTCGGCCAGATCTGCGGCGACCCGCTCGATGCTTACGACGACCGGAC
ACTCGAGTGCATGAGCGTTCAGCAGAATGTGCAGCGCATCCTGAACTCGCGTGCCGGCGCGCTGAAGCATCTGCCGGACT
ATGGGCTGCCGGATCTGACGAACATCTACAAGGCGCTGCCCGCGTCAGCCCACATGCTCAAGCAGCAGATGGAGGCGACG
CTCCTGAAATATGAGCCCCGCATCCGCTCCATCGACGTCGCCATCCTCGAAAATGACGATCCTGGCGTGCTGGTGAGTTT
TGAAATGACGTGCCATCTGAAGAAGGCCGGACTCGTGCGGTTCGGTACGTATTTCGAGCCTCCCGGGCGCATGTGGCTGA
AACGCCGGAGTGCGGGGCACGATTAA