Detailed information of component protein


Summary

Component ID T6CP015187
Component protein type TssA
T6SS ID (Type) T6SS01196 experimental (Type i4b)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (374 a.a.); Nucleotide sequence (1122 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS01755
Coordinate (Strand) 360756..361877 (+)
NCBI ID WP_006494418.1
RefSeq NZ_HG938370
Uniprot ID A0A364GT00_9BURK, A0A1V2W6E8_9BURK
KEGG ID -
PDB ID 6H8E, 6HS5, 6H8F, 6HS6
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 2.3e-36 9..131
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-373 MPINLPELLTPISEASPSGDDLLFSNEFDAIQDARRYDDPTLDQGEWVTEIKEADWGFVVDHAGELLRTRTKDLRLAVWLTEALALEDGITGLTEGYALLEGLCREFWDTFHPLPEDDDIEHRLGNVAWLSGRTAELLRAVPLTDGASNAFSTLDWEVAQHVAQSIKRDPEHADDIARGKPSIEQIDASRRVTSIAFYTALLANLKAFEFALDAFEERLVERAGDSAPSFRQARDAFETVYRLAERFAREQGYTGSAPHTQAAQQAQPERIEPVFGQPIQTEETHVQQQTASRPPVTQTIAGIQNRAQAVDQLRAVARYFRQTEPHSPVAYLADKAAEWADMPLHKWLESVVKDDGSLSHIRELLGVRPDEQS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9718 - -


  Protein sequence: 374 a.a.    

>T6CP015187 NZ_HG938370:360756-361877 [Burkholderia cenocepacia H111] [TssA]
MPINLPELLTPISEASPSGDDLLFSNEFDAIQDARRYDDPTLDQGEWVTEIKEADWGFVVDHAGELLRTRTKDLRLAVWL
TEALALEDGITGLTEGYALLEGLCREFWDTFHPLPEDDDIEHRLGNVAWLSGRTAELLRAVPLTDGASNAFSTLDWEVAQ
HVAQSIKRDPEHADDIARGKPSIEQIDASRRVTSIAFYTALLANLKAFEFALDAFEERLVERAGDSAPSFRQARDAFETV
YRLAERFAREQGYTGSAPHTQAAQQAQPERIEPVFGQPIQTEETHVQQQTASRPPVTQTIAGIQNRAQAVDQLRAVARYF
RQTEPHSPVAYLADKAAEWADMPLHKWLESVVKDDGSLSHIRELLGVRPDEQS*

  Nucleotide sequence: 1122 bp    

>T6CP015187 NZ_HG938370:360756-361877 [Burkholderia cenocepacia H111] [TssA]
ATGCCGATCAATCTCCCCGAGCTGCTGACGCCGATCAGCGAGGCGTCGCCCAGCGGCGACGACCTGCTGTTCTCGAACGA
ATTCGACGCGATCCAGGACGCGCGGCGCTACGACGACCCGACGCTCGACCAGGGCGAATGGGTGACCGAGATCAAGGAGG
CCGACTGGGGCTTCGTCGTCGACCATGCGGGCGAGCTGCTGCGCACCCGCACGAAGGACCTGCGGCTCGCCGTGTGGCTG
ACCGAGGCGCTCGCGCTCGAGGACGGCATCACCGGCCTCACCGAAGGCTATGCGCTGCTCGAGGGCCTGTGCCGCGAGTT
CTGGGACACCTTCCACCCGCTGCCCGAGGACGACGACATCGAGCACCGGCTCGGCAACGTCGCATGGCTTTCCGGTCGCA
CGGCCGAGCTGCTGCGCGCGGTGCCGCTGACCGACGGTGCATCGAATGCGTTCAGCACGCTCGACTGGGAAGTCGCGCAG
CACGTCGCGCAGTCGATCAAGCGCGACCCCGAGCATGCGGACGACATCGCGCGCGGCAAGCCGTCGATCGAGCAGATCGA
CGCGTCGCGGCGCGTGACGTCGATCGCGTTCTACACGGCGCTGCTGGCGAACCTGAAGGCGTTCGAATTCGCGCTCGATG
CGTTCGAGGAGCGGCTCGTCGAGCGCGCGGGCGATTCGGCGCCGAGCTTCCGGCAGGCGCGCGACGCGTTCGAGACCGTG
TACCGGCTCGCCGAGCGCTTCGCGCGCGAACAGGGCTATACCGGCAGCGCGCCGCACACGCAGGCGGCGCAGCAGGCCCA
GCCCGAGCGCATCGAGCCGGTGTTCGGCCAACCGATCCAGACCGAGGAGACTCACGTGCAGCAGCAGACCGCTTCGCGTC
CTCCGGTGACGCAGACGATCGCCGGCATCCAGAACCGTGCGCAGGCCGTCGACCAGTTGCGTGCGGTGGCGCGCTATTTC
CGTCAGACCGAGCCGCACAGCCCGGTCGCGTATCTCGCCGACAAGGCGGCCGAATGGGCCGACATGCCGCTGCACAAGTG
GCTCGAGAGCGTCGTGAAGGACGACGGCTCGCTGTCGCATATTCGCGAACTGCTGGGCGTGCGGCCCGACGAGCAGTCGT
AA