Detailed information of component protein


Summary

Component ID T6CP015186
Component protein type TssH
T6SS ID (Type) T6SS01196 experimental (Type i4b)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (890 a.a.); Nucleotide sequence (2670 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS01750
Coordinate (Strand) 358042..360711 (+)
NCBI ID WP_006494419.1
RefSeq NZ_HG938370
Uniprot ID A0A1V6KQ68_9BURK
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 9.1e-43 619..787
AAA_lid_9 PF17871.3 2.1e-28 374..466
ClpB_D2-small PF10431.11 8.6e-10 794..868
AAA PF00004.31 1.7e-09 232..344
Clp_N PF02861.22 2.7e-08 23..74
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-889 MSTPLKTLITKLNPLCRHATERAASACLARGHYEVDLEHLFLALLDEATGDLPLALRASRVDPHALHADLERELTRLKTGNTRTPVFSVHLIALFEQAWLIASLDSQLGRIRSGHLLLALLTAPDLAQFAQRMSSRFAEMNVTDLKHKFDEIMAGSSEAEPRQTDDEGSDVAPAADGMAPAAGPSKTPALDTYTTNLTQRARDGKIDPVIGREAEIRQAIDILMRRRQNNPIMTGEAGVGKTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKVEEPSEPLAAAMLRGMSGLMEKHFNVRILDDAITEAVRLSHRYISGRQLPDKAISVLDTACAKVALAHSATPAAIDDTKKRIERIDAEIASLEREAAGGAAHDERLGELRGARDTALEQLAKDEERYEAERVIVAEITELRDALDRARGPSEDGQPVDVQATRDKLAERVAALHALQGGEPMVPLQVDGHVVAEIVAAWTGIPLGRMVKDEIDTVLNLQPLLTARVIGQDHALEAIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALALADILYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGTMDDAEGREIDFRNTLIILTSNVGSAAVMQACLNKPAEELPDPDTLAETLRPQLYKTFKPAFLGRMKVVPYYPISDDVLAEIIELKLERIRRRIEANHKAAFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLGRIADGAAIARIAVRADEAGEFAYTVE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9935 - -


  Protein sequence: 890 a.a.    

>T6CP015186 NZ_HG938370:358042-360711 [Burkholderia cenocepacia H111] [TssH]
MSTPLKTLITKLNPLCRHATERAASACLARGHYEVDLEHLFLALLDEATGDLPLALRASRVDPHALHADLERELTRLKTG
NTRTPVFSVHLIALFEQAWLIASLDSQLGRIRSGHLLLALLTAPDLAQFAQRMSSRFAEMNVTDLKHKFDEIMAGSSEAE
PRQTDDEGSDVAPAADGMAPAAGPSKTPALDTYTTNLTQRARDGKIDPVIGREAEIRQAIDILMRRRQNNPIMTGEAGVG
KTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQAG
QNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKVEEPSEPLAAAMLRGMSGLMEKHFNVRILDDAIT
EAVRLSHRYISGRQLPDKAISVLDTACAKVALAHSATPAAIDDTKKRIERIDAEIASLEREAAGGAAHDERLGELRGARD
TALEQLAKDEERYEAERVIVAEITELRDALDRARGPSEDGQPVDVQATRDKLAERVAALHALQGGEPMVPLQVDGHVVAE
IVAAWTGIPLGRMVKDEIDTVLNLQPLLTARVIGQDHALEAIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALAL
ADILYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGT
MDDAEGREIDFRNTLIILTSNVGSAAVMQACLNKPAEELPDPDTLAETLRPQLYKTFKPAFLGRMKVVPYYPISDDVLAE
IIELKLERIRRRIEANHKAAFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLGRIADGAAIARIAVRADE
AGEFAYTVE*

  Nucleotide sequence: 2670 bp    

>T6CP015186 NZ_HG938370:358042-360711 [Burkholderia cenocepacia H111] [TssH]
ATGAGCACGCCTCTGAAGACCCTGATCACGAAACTGAACCCGCTGTGCCGCCACGCGACCGAGCGGGCGGCGAGCGCGTG
CCTGGCGCGCGGCCACTACGAGGTCGATCTGGAACACCTGTTCCTCGCGTTGCTCGACGAGGCGACGGGCGACCTGCCGC
TCGCGTTGCGCGCGAGCCGCGTCGATCCGCATGCGCTGCATGCCGATCTCGAACGCGAGCTCACGCGCCTGAAGACCGGC
AACACGCGCACGCCGGTGTTCTCCGTCCATCTGATCGCGCTGTTCGAGCAGGCATGGCTGATCGCGTCGCTCGATTCGCA
GCTCGGCCGCATCCGGTCGGGGCACCTGCTGCTCGCGCTGCTGACCGCGCCGGATCTCGCGCAGTTCGCGCAACGGATGT
CGTCGCGCTTCGCGGAAATGAACGTGACGGACCTGAAGCACAAGTTCGACGAAATCATGGCCGGTTCGAGCGAAGCCGAG
CCGCGCCAGACGGACGACGAGGGCAGCGACGTCGCGCCCGCCGCCGACGGCATGGCACCCGCGGCCGGCCCGTCGAAGAC
GCCCGCGCTCGACACGTACACGACCAACCTCACGCAGCGCGCCCGCGACGGCAAGATCGATCCGGTGATCGGCCGCGAAG
CGGAGATCCGCCAGGCGATCGACATCCTGATGCGCCGTCGCCAGAACAACCCGATCATGACCGGCGAGGCCGGCGTCGGC
AAAACGGCGGTCGTCGAAGGGCTCGCGCTGCGGATCGCGGCCGACGACGTGCCGCCGCCGTTGCGCGGCGTCGCGCTGCA
CGTGCTCGACATGGGGCTGCTGCAGGCCGGCGCGAGCGTGAAGGGCGAGTTCGAGAACCGGCTGAAGAGCGTGATCGACG
AGGTGAAGAAGAGCGCGCATCCGATCATCCTGTTCATCGACGAGGCGCACACGATCATCGGCGCGGGCGGCCAGGCCGGC
CAGAACGACGCGGCGAACCTGCTGAAGCCGGCGCTCGCGCGCGGCGAGCTGCGCACGATCGCCGCGACGACGTGGAGCGA
ATACAAGAAGTATTTCGAGAAGGATGCGGCGCTCGCGCGGCGCTTCCAGGTCGTGAAGGTCGAGGAGCCGAGCGAGCCGC
TCGCGGCCGCGATGCTGCGCGGGATGTCGGGCCTGATGGAGAAGCACTTCAACGTGCGGATCCTCGACGATGCGATCACC
GAGGCCGTGCGCCTGTCGCATCGCTACATCAGCGGCCGTCAGCTGCCGGACAAGGCGATCAGCGTGCTCGACACCGCATG
CGCGAAGGTCGCGCTCGCGCACAGCGCGACACCGGCGGCGATCGACGACACCAAGAAGCGCATCGAGCGCATCGATGCGG
AAATCGCGTCGCTCGAGCGCGAGGCGGCGGGCGGCGCGGCGCACGACGAGCGGCTTGGCGAGCTGCGCGGCGCGCGCGAC
ACGGCGCTCGAACAACTGGCAAAGGACGAGGAACGCTACGAAGCCGAGCGCGTGATCGTCGCCGAGATCACCGAGCTGCG
CGATGCGCTCGACCGCGCACGCGGCCCGTCGGAAGACGGCCAGCCGGTCGACGTGCAGGCCACCCGCGACAAGCTCGCGG
AGCGCGTCGCGGCGCTGCACGCGCTGCAAGGGGGCGAGCCGATGGTGCCGCTGCAGGTCGACGGCCACGTGGTCGCCGAG
ATCGTCGCCGCGTGGACCGGCATTCCGCTCGGCCGGATGGTGAAGGACGAGATCGACACCGTGCTGAACCTGCAGCCGCT
GCTGACCGCGCGCGTGATCGGCCAGGACCATGCGCTGGAGGCGATCGCGCAGCGCGTGCGCACCGCGACCGCGAACCTCG
AGGATCCGAACAAGCCGCGCGGCGTGTTCATGTTCGTCGGGCCGTCGGGCGTCGGCAAGACCGAGACGGCGCTGGCGTTG
GCCGACATCCTGTACGGCGGCGAGCGCAAGATGGTCACGATCAACATGAGCGAGTACCAGGAAGCGCACAGCGTGTCGGG
CCTGAAGGGCTCGCCGCCGGGCTACGTCGGTTACGGCGAAGGCGGCGTGCTGACCGAGGCCGTGCGCCGCAACCCGTATT
CCGTCGTGCTGCTCGACGAAGTCGAGAAGGCGCACCCCGACGTGCTCGAAATGTTCTTCCAGGTGTTCGACAAGGGCACG
ATGGACGATGCGGAAGGGCGCGAGATCGACTTTCGCAACACGCTGATCATCCTGACCTCGAACGTCGGCTCGGCCGCGGT
GATGCAGGCGTGCCTGAACAAGCCGGCCGAGGAACTGCCCGACCCGGACACGCTCGCCGAGACGCTGCGTCCGCAGTTGT
ACAAGACCTTCAAGCCGGCGTTCCTCGGCCGGATGAAGGTCGTGCCGTACTACCCGATTTCCGACGACGTGCTGGCCGAG
ATCATCGAGCTGAAGCTCGAACGCATCCGCCGCCGGATCGAAGCGAACCACAAGGCCGCGTTCGAGTGGGACGAGTCGCT
CGTCGACGCGGTGCTCGCGCGCTGCACCGAGGTCGACTCGGGCGCCCGCAACGTCGACCACATCCTGAACGGCACGCTGC
TGCCGGAGATCGCGGGCCACGTGCTGGGCCGGATCGCCGACGGCGCGGCCATCGCGCGCATCGCGGTGCGCGCGGACGAG
GCCGGCGAATTCGCGTACACCGTCGAATGA