Detailed information of component protein


Summary

Component ID T6CP015185
Component protein type TssG
T6SS ID (Type) T6SS01196 experimental (Type i4b)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (367 a.a.); Nucleotide sequence (1101 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS01745
Coordinate (Strand) 356900..358000 (+)
NCBI ID WP_006494420.1
RefSeq NZ_HG938370
Uniprot ID A0A1V2W5S3_9BURK
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 6.1e-90 19..346
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-366 MQAPNRRIDPGVVDALLDEPHRFEFFQAVRVLEGLFARQASDAPGAWRQGDVVAQRIAFRNTLSLGFPPSEIEGARSFDGDGASLSSGEQRGAALAAGELGRVELTPAFFGLLGGQGALPLHYTEQIVAREHLRRDHAARAFFDVFSNRATALFYAAWKKYRLPFHYELDRDERYLPLLLAIAGVPSDEVRDSLAAGAGGVLDEAVAGYALAARHRPMSAAYLQRTLSDYFRVPVKIDQFVGKWYDVPPDQLSVLGEVNAVLGATALVGERVWQRDMRARIVVGPLSKRDYEAFLPGGAQAVALERMLTLLAGVTLEYEVKLVLKRTEVGASVLGAGSRLGWDAFLCTRDAAEDRSDARYELHVIH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9826 - -


  Protein sequence: 367 a.a.    

>T6CP015185 NZ_HG938370:356900-358000 [Burkholderia cenocepacia H111] [TssG]
MQAPNRRIDPGVVDALLDEPHRFEFFQAVRVLEGLFARQASDAPGAWRQGDVVAQRIAFRNTLSLGFPPSEIEGARSFDG
DGASLSSGEQRGAALAAGELGRVELTPAFFGLLGGQGALPLHYTEQIVAREHLRRDHAARAFFDVFSNRATALFYAAWKK
YRLPFHYELDRDERYLPLLLAIAGVPSDEVRDSLAAGAGGVLDEAVAGYALAARHRPMSAAYLQRTLSDYFRVPVKIDQF
VGKWYDVPPDQLSVLGEVNAVLGATALVGERVWQRDMRARIVVGPLSKRDYEAFLPGGAQAVALERMLTLLAGVTLEYEV
KLVLKRTEVGASVLGAGSRLGWDAFLCTRDAAEDRSDARYELHVIH*

  Nucleotide sequence: 1101 bp    

>T6CP015185 NZ_HG938370:356900-358000 [Burkholderia cenocepacia H111] [TssG]
ATGCAAGCCCCGAACCGGCGAATCGATCCTGGCGTAGTCGACGCGCTGCTCGACGAGCCGCACCGCTTCGAGTTCTTCCA
GGCGGTGCGCGTGCTCGAAGGGTTGTTCGCGCGGCAGGCGTCGGATGCGCCCGGCGCGTGGCGGCAGGGCGACGTGGTCG
CGCAGCGCATCGCATTCCGCAACACGCTGTCGCTCGGCTTTCCGCCGAGCGAGATCGAAGGTGCGCGCTCGTTCGACGGC
GACGGCGCGTCGCTGAGTTCGGGCGAGCAGCGCGGCGCCGCGCTGGCCGCCGGCGAACTCGGCCGCGTCGAGCTGACGCC
CGCGTTCTTCGGGCTGCTCGGCGGGCAAGGCGCGCTGCCGCTGCACTACACCGAGCAGATCGTCGCGCGCGAGCATCTGC
GGCGCGACCATGCGGCGCGCGCGTTCTTCGACGTGTTCTCGAACCGCGCGACCGCGCTGTTCTACGCGGCGTGGAAGAAA
TACCGGCTGCCGTTCCACTACGAGCTCGACCGCGACGAGCGCTACTTGCCGCTGTTGCTCGCGATCGCGGGCGTGCCGAG
CGACGAGGTGCGCGACAGCCTCGCGGCCGGCGCGGGCGGTGTGCTCGACGAGGCCGTGGCCGGCTACGCGCTCGCCGCGC
GGCACCGGCCGATGTCGGCCGCCTACCTGCAGCGCACGCTGTCCGATTACTTCCGCGTGCCGGTGAAGATCGACCAGTTC
GTCGGCAAGTGGTACGACGTGCCGCCCGATCAGCTGAGCGTGCTCGGCGAAGTCAACGCGGTGCTCGGCGCGACGGCGCT
CGTCGGCGAGCGCGTGTGGCAGCGCGACATGCGCGCGCGAATCGTCGTCGGCCCGCTGTCCAAGCGCGACTACGAGGCGT
TCCTGCCCGGCGGCGCGCAGGCCGTCGCGCTCGAGCGGATGCTGACGCTGCTCGCCGGCGTCACGCTCGAATACGAGGTG
AAGCTCGTGCTCAAGCGCACCGAGGTCGGCGCGAGCGTGCTCGGCGCGGGCTCGCGGCTCGGCTGGGATGCGTTCCTGTG
CACGCGCGACGCGGCCGAGGACCGTTCGGACGCCCGCTACGAACTGCACGTGATTCACTGA