Detailed information of component protein


Summary

Component ID T6CP015184
Component protein type TssF
T6SS ID (Type) T6SS01196 experimental (Type i4b)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (612 a.a.); Nucleotide sequence (1836 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS01740
Coordinate (Strand) 355101..356936 (+)
NCBI ID WP_006494422.1
RefSeq NZ_HG938370
Uniprot ID A0A364GT55_9BURK, A0A1V2W653_9BURK
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.8e-192 2..607
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-611 MEELLPYYERELSFLRRYSRDFAERYPKIAARLALSGEHCEDPHVERMIESFALLGARINKKLDDDYPEFTEALLEVLYPHYLRPFPSCSIAQFTPASPGQQTEPVVIERGTELKSRPIRGVQCRFRTAYDVTLAPIRISEARYTPVALAPSATVLPSNATGVISITFESLAAQLDLGALKLSTLRAHLHGEQSFVAALTDCLFVNVLGAYVEPERNGRWTALRKLPIAQAGFAEDDALIDYPAKSHPAYRLLTEYFAFPDKFDFVDFDLAAIARASGRCQRATLHLVLQDVRSDSHVARLLELLTASHFRLFCTPIVNLFRQHGEPIRITHRAVSYPVIAEARRAFAYEVYSIDSVKLVRQQAHEESVIEFRPFYSLHHGEAARIGHYWFARRNDWVAQKSPGYETEISIVDIDFEPTSPQTDTLSLDLTCTNRDLPAMLAFGLEGGDLFQEGGAQTSGISLLRRPTQSVRFERGRAAHWRLVSHLALNHVSLVAHGLAPLKEMLTLYDLRRTAVSMRQIDGLVGVEQRGAVQWLPGKPFATFVRGIEIRLTIDEEHFVGASLASFVRVLDSFFGLYVHLNSFVQLVVVSKRTGEEIIRCKPRTGESILA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9927 - -


  Protein sequence: 612 a.a.    

>T6CP015184 NZ_HG938370:355101-356936 [Burkholderia cenocepacia H111] [TssF]
MEELLPYYERELSFLRRYSRDFAERYPKIAARLALSGEHCEDPHVERMIESFALLGARINKKLDDDYPEFTEALLEVLYP
HYLRPFPSCSIAQFTPASPGQQTEPVVIERGTELKSRPIRGVQCRFRTAYDVTLAPIRISEARYTPVALAPSATVLPSNA
TGVISITFESLAAQLDLGALKLSTLRAHLHGEQSFVAALTDCLFVNVLGAYVEPERNGRWTALRKLPIAQAGFAEDDALI
DYPAKSHPAYRLLTEYFAFPDKFDFVDFDLAAIARASGRCQRATLHLVLQDVRSDSHVARLLELLTASHFRLFCTPIVNL
FRQHGEPIRITHRAVSYPVIAEARRAFAYEVYSIDSVKLVRQQAHEESVIEFRPFYSLHHGEAARIGHYWFARRNDWVAQ
KSPGYETEISIVDIDFEPTSPQTDTLSLDLTCTNRDLPAMLAFGLEGGDLFQEGGAQTSGISLLRRPTQSVRFERGRAAH
WRLVSHLALNHVSLVAHGLAPLKEMLTLYDLRRTAVSMRQIDGLVGVEQRGAVQWLPGKPFATFVRGIEIRLTIDEEHFV
GASLASFVRVLDSFFGLYVHLNSFVQLVVVSKRTGEEIIRCKPRTGESILA*

  Nucleotide sequence: 1836 bp    

>T6CP015184 NZ_HG938370:355101-356936 [Burkholderia cenocepacia H111] [TssF]
ATGGAAGAATTGCTGCCGTATTACGAACGCGAATTATCGTTTTTGCGGCGCTATTCGCGAGATTTCGCCGAACGCTATCC
GAAGATCGCCGCGCGCCTCGCGCTGTCCGGCGAGCATTGCGAGGATCCGCACGTCGAGCGGATGATCGAGTCGTTCGCGC
TGCTCGGCGCGCGCATCAACAAGAAGCTCGACGACGACTACCCCGAATTCACCGAAGCGCTGCTGGAAGTGCTGTATCCG
CACTACCTGCGGCCGTTCCCGTCGTGTTCGATCGCGCAGTTCACGCCGGCTTCGCCCGGCCAGCAGACCGAACCGGTCGT
GATCGAGCGCGGCACCGAGCTGAAGAGCCGTCCGATCCGCGGCGTGCAATGCCGGTTCCGTACCGCCTACGACGTGACGC
TCGCGCCGATCCGCATCTCGGAAGCACGCTATACGCCGGTCGCGCTCGCGCCGAGCGCGACGGTGCTGCCGTCGAACGCG
ACGGGCGTGATCTCGATCACGTTCGAATCGCTCGCCGCGCAGCTCGATCTCGGCGCGCTGAAGCTGTCGACGCTGCGCGC
GCACCTGCACGGCGAGCAGTCGTTCGTCGCCGCGCTCACCGACTGCCTGTTCGTCAACGTGCTCGGCGCGTACGTCGAGC
CCGAACGCAACGGCCGCTGGACCGCGCTGCGCAAGCTGCCGATCGCGCAGGCCGGCTTCGCCGAGGACGACGCGCTGATC
GACTATCCGGCGAAATCGCATCCCGCATACCGGCTGCTCACCGAATACTTCGCGTTTCCCGACAAGTTCGATTTCGTCGA
CTTCGACCTCGCGGCGATCGCGCGCGCGTCGGGCCGCTGCCAGCGCGCGACGCTGCATCTGGTGCTGCAGGACGTGCGCA
GCGATTCGCACGTCGCGCGCCTGCTCGAATTGCTGACGGCGAGCCATTTCCGGCTGTTCTGCACGCCGATCGTGAACCTG
TTCCGCCAGCACGGCGAGCCGATCCGCATCACGCACCGCGCGGTGTCGTATCCGGTGATCGCCGAGGCGCGGCGCGCGTT
CGCGTACGAGGTGTACTCGATCGACTCGGTGAAGCTCGTCCGGCAGCAGGCGCACGAGGAATCGGTGATCGAGTTCCGGC
CGTTCTATTCGCTGCATCACGGCGAAGCGGCGCGGATCGGCCACTACTGGTTCGCGCGGCGCAACGACTGGGTCGCGCAG
AAGAGCCCCGGCTACGAAACCGAGATCTCGATCGTCGACATCGACTTCGAGCCGACGTCGCCGCAGACCGACACGCTGAG
CCTCGACCTCACCTGCACGAACCGCGACCTGCCGGCGATGCTGGCGTTCGGCCTCGAAGGCGGCGACCTGTTCCAGGAAG
GCGGCGCGCAGACGAGCGGCATTTCGCTGCTGCGTCGCCCGACGCAGAGCGTGCGCTTCGAGCGCGGCCGCGCCGCGCAC
TGGCGGCTCGTGTCGCATCTCGCGCTCAACCACGTATCGCTCGTCGCGCACGGCCTCGCGCCGCTGAAGGAAATGCTGAC
GCTGTACGACCTGCGACGCACGGCGGTGTCGATGCGCCAGATCGACGGCCTGGTCGGCGTCGAGCAGCGCGGCGCCGTGC
AGTGGCTGCCCGGCAAGCCGTTCGCGACCTTCGTGCGCGGCATCGAGATCCGGCTGACGATCGACGAGGAACACTTCGTC
GGCGCGAGCCTAGCGTCCTTCGTGCGCGTGCTCGACAGCTTCTTCGGGCTGTACGTCCACCTCAACAGTTTCGTTCAATT
GGTCGTCGTGTCGAAGCGCACCGGCGAGGAGATCATTCGATGCAAGCCCCGAACCGGCGAATCGATCCTGGCGTAG