Detailed information of component protein
Summary
| Component ID | T6CP015183 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01196  (Type i4b) |
| Strain | Burkholderia cenocepacia H111 |
| Replicon | chromosome |
| Sequence | Protein sequence (162 a.a.); Nucleotide sequence (486 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | I35_RS01735 |
| Coordinate (Strand) | 354539..355024 (+) |
| NCBI ID | WP_006477092.1 |
| RefSeq | NZ_HG938370 |
| Uniprot ID | B4E6R6_BURCJ, A0A364GSY5_9BURK, A0A095FYD8_BURCE, A0A0H2XTR9_BURCA, A2VTD9_9BURK, B1JUP0_BURCC, Q39K53_BURL3, A0A1D7ZEB8_9BURK, A0A1V2W7A7_9BURK |
| KEGG ID | bstl:BBJ41_12135, bcm:Bcenmc03_0448, bced:DM42_1363, bcj:BCAL0344, bur:Bcep18194_A3562, bcn:Bcen_2636 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1.1e-21 | 32..132 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-161 | MKRFEPSFLDKLFDDEPHLPASAAMRQLSLDELKNTVARDVEAILNTRIAHTENELAALPECQKSVLTYGLNDFAGLSLASHYDRAFICKSIQQAIARHEPRLQQVQVTFELNEQATNALYFAIQALLVVHPAEEPVSFDAMLQPSTLQYSVTRARAARMQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9842 | - | - |
Protein sequence: 162 a.a.
>T6CP015183 NZ_HG938370:354539-355024 [Burkholderia cenocepacia H111] [TssE]
MKRFEPSFLDKLFDDEPHLPASAAMRQLSLDELKNTVARDVEAILNTRIAHTENELAALPECQKSVLTYGLNDFAGLSLA
SHYDRAFICKSIQQAIARHEPRLQQVQVTFELNEQATNALYFAIQALLVVHPAEEPVSFDAMLQPSTLQYSVTRARAARM
Q*
MKRFEPSFLDKLFDDEPHLPASAAMRQLSLDELKNTVARDVEAILNTRIAHTENELAALPECQKSVLTYGLNDFAGLSLA
SHYDRAFICKSIQQAIARHEPRLQQVQVTFELNEQATNALYFAIQALLVVHPAEEPVSFDAMLQPSTLQYSVTRARAARM
Q*
Nucleotide sequence: 486 bp
>T6CP015183 NZ_HG938370:354539-355024 [Burkholderia cenocepacia H111] [TssE]
ATGAAACGATTCGAACCCAGTTTTCTCGACAAGCTGTTCGACGACGAACCGCATCTGCCGGCCTCGGCCGCGATGCGGCA
ATTGTCGCTGGACGAGCTCAAGAACACGGTCGCCCGCGACGTCGAGGCGATCCTCAACACCCGTATCGCGCATACCGAGA
ACGAGCTGGCCGCGCTGCCGGAATGCCAGAAATCGGTGCTGACCTACGGGCTGAACGATTTCGCGGGGCTGAGCCTCGCG
AGCCACTACGACCGCGCATTCATCTGCAAGTCGATCCAGCAGGCCATCGCGCGCCACGAGCCGCGCCTGCAGCAGGTGCA
GGTGACGTTCGAGCTGAACGAGCAGGCCACCAACGCGCTGTACTTCGCGATCCAGGCGCTGCTCGTCGTGCACCCGGCCG
AGGAGCCGGTGAGTTTCGACGCGATGCTGCAACCGTCGACGCTGCAGTATTCGGTCACGCGCGCACGCGCGGCACGCATG
CAGTAA
ATGAAACGATTCGAACCCAGTTTTCTCGACAAGCTGTTCGACGACGAACCGCATCTGCCGGCCTCGGCCGCGATGCGGCA
ATTGTCGCTGGACGAGCTCAAGAACACGGTCGCCCGCGACGTCGAGGCGATCCTCAACACCCGTATCGCGCATACCGAGA
ACGAGCTGGCCGCGCTGCCGGAATGCCAGAAATCGGTGCTGACCTACGGGCTGAACGATTTCGCGGGGCTGAGCCTCGCG
AGCCACTACGACCGCGCATTCATCTGCAAGTCGATCCAGCAGGCCATCGCGCGCCACGAGCCGCGCCTGCAGCAGGTGCA
GGTGACGTTCGAGCTGAACGAGCAGGCCACCAACGCGCTGTACTTCGCGATCCAGGCGCTGCTCGTCGTGCACCCGGCCG
AGGAGCCGGTGAGTTTCGACGCGATGCTGCAACCGTCGACGCTGCAGTATTCGGTCACGCGCGCACGCGCGGCACGCATG
CAGTAA