Detailed information of component protein


Summary

Component ID T6CP015181
Component protein type TssC
T6SS ID (Type) T6SS01196 experimental (Type i4b)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (497 a.a.); Nucleotide sequence (1491 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS01725
Coordinate (Strand) 352412..353902 (+)
NCBI ID WP_006484397.1
RefSeq NZ_HG938370
Uniprot ID A0A124P676_9BURK, A0A2G1SLR6_9BURK, B4E6R4_BURCJ, A0A364GSY7_9BURK, A0A1V2X7M4_9BURK
KEGG ID bcj:BCAL0342
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.7e-136 68..370
VipB_2 PF18945.2 1.5e-46 380..490
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-496 MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLISTQLSAVMHAPEFQRLESTWRGLDYLVKESNTGQTIKIKALHAPKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGALIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDAEDSRYVGLTLPRFLGRLPFNPKDGQTAENFNFVEDVDGTDHDKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFKTDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVAHYLKAMMRDKIGSFASAQNVETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDELSISLRLVADLPKPANS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9250 - -


  Protein sequence: 497 a.a.    

>T6CP015181 NZ_HG938370:352412-353902 [Burkholderia cenocepacia H111] [TssC]
MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLIST
QLSAVMHAPEFQRLESTWRGLDYLVKESNTGQTIKIKALHAPKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGA
LIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDAEDSRYVGL
TLPRFLGRLPFNPKDGQTAENFNFVEDVDGTDHDKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK
TDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVA
HYLKAMMRDKIGSFASAQNVETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDEL
SISLRLVADLPKPANS*

  Nucleotide sequence: 1491 bp    

>T6CP015181 NZ_HG938370:352412-353902 [Burkholderia cenocepacia H111] [TssC]
ATGAACCAGCAAACGGCTGCGGCCCAAGCGAGCGGCGCGGAATACGCCGCCGGGACTTCGTTGCTCGACGACATCGTCGA
GAAGAGCAAGGTCGCGAAATCCGATTCCGAGCATGCGCGCGCGAAGGACCTGATCGGCGAACTCGTGCACCAGGTGCTCG
ACGGCACGGTGATCGTGTCGGACAACCTGTCGGCCACGATCGATGCGCGCGTCGCGGAACTCGACCGCCTGATTTCCACG
CAGCTTTCCGCGGTGATGCACGCGCCGGAATTCCAGCGCCTCGAAAGCACGTGGCGCGGGCTGGACTATCTGGTCAAGGA
AAGCAACACGGGCCAGACGATCAAGATCAAGGCGCTGCACGCACCGAAGCGCGACCTCGTGCGCGATTTCAAGGGCGCGA
GCGAGTTCGACCAGAGCGCGCTGTTCAAGAAGGTCTACGAAGAGGAATTCGGCACGTTCGGCGGTTCGCCGTTCGGTGCG
CTGATCGGCGATTACGAGATCTCGCGCCAGCCGGAAGACATGTATTTCATCGAGCAGATGTCGCACGTCGCGGCGGCCGC
GCATGCGCCGTTCATCGCGTCGGCGTCGCCGGAGCTGCTCGGCCTCGAGTCGTTCTCCGACCTCGGCAAGCCGCGCGACC
TCGGCAAGGTGTTCGACACCGTCGAATACGCGAAGTGGAAATCGTTCCGCGACGCCGAGGATTCCCGCTACGTCGGCCTG
ACGCTGCCGCGCTTCCTCGGCCGCCTGCCGTTCAATCCGAAGGACGGCCAGACCGCGGAGAACTTCAACTTCGTCGAGGA
CGTCGACGGCACCGACCACGACAAGTACCTGTGGTGCAACGCGGCATGGGCCTTCGCGGCACGCCTGACGGCCGCGTTCG
ACGACTTCGGCTGGTGCGCGGCGATCCGCGGCGTCGAAGGCGGCGGCCTCGTCGAGGATCTGCCGACCCACACGTTCAAG
ACCGACGACGGTGAAGTCGCGCTGAAGTGCCCGACCGAAATCGCGATCACCGATCGCCGCGAGAAGGAGCTGAGCGACCT
CGGCTTCATCCCGCTCGTCCATTGCAAGAACTCAGATTACGCCGCGTTCTTCGCTGCGCAGTCGGTGCAGAAGCCGAAAA
AGTACAGCACCGACAGCGCGAATGCGAACGCCGTCCTGTCCGCCCAGCTTCAGTACATCTTCTCGGTATCGCGCGTCGCG
CACTACCTGAAGGCGATGATGCGGGACAAGATCGGCAGCTTCGCATCGGCGCAGAACGTGGAGACTTTCCTCAACCGGTG
GATTTCGCAGTACGTCCTGCTCGACGACAACGCCTCGCAGGAACAGAAAGCGCAATTCCCGCTGCGCGAGGCATCCATAC
AAGTGTCGGAGATTCCGGGCAAGCCGGGCTCGTATCGTTCGGTCGCGTTCCTGCGCCCGCACTTTCAGCTCGACGAACTC
TCGATTTCTCTGCGACTTGTCGCTGATCTGCCCAAACCGGCAAATTCATAA