Detailed information of component protein
Summary
| Component ID | T6CP015180 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01196  (Type i4b) |
| Strain | Burkholderia cenocepacia H111 |
| Replicon | chromosome |
| Sequence | Protein sequence (172 a.a.); Nucleotide sequence (516 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | I35_RS01720 |
| Coordinate (Strand) | 351881..352396 (+) |
| NCBI ID | WP_006484395.1 |
| RefSeq | NZ_HG938370 |
| Uniprot ID | A0A132F5X6_9BURK, U2FXG3_9BURK, A0A6J5EZP2_9BURK, A0A084D9C7_9BURK, A0A1K1SA47_9BURK, A0A1X1P833_9BURK, A0A228PZN2_9BURK, A0A228HZP1_9BURK, B4E6R3_BURCJ, A0A3N8HPB5_9BURK, A0A365QNN2_9BURK, A0A095DVF1_BURCE, A0A0H2XTR8_BURCA, B1JUN7_BURCC, Q39K56_BURL3, A0A1B4HQA1_9BURK, A0A087NNS1_BURPY, A0A4Q2AR48_9BURK, A0A071MFD7_9BURK |
| KEGG ID | bmec:WJ16_01955, bced:DM42_1366, bur:Bcep18194_A3559, bpsl:WS57_19815, bcn:Bcen_2639, bcm:Bcenmc03_0445, bcj:BCAL0341, bpyr:ABD05_07970 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 6.7e-61 | 12..162 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-171 | MAKKESIQKSLQKIRPPRVQLTYEVEKGDAIEVKELPFVVGVVGDLAGQSEIEQPKLRDRKFVNIDRDNFDDVMKAIEPRAAFQVENRLSPEGGKFAVDLKFRSLSDFSPDEVVEQVEPLRRLLEARSKLADLRNKLAGNDKLEDLLSEVLKNTQQLQELAKGTGGDKDGE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9966 | - | - |
Protein sequence: 172 a.a.
>T6CP015180 NZ_HG938370:351881-352396 [Burkholderia cenocepacia H111] [TssB]
MAKKESIQKSLQKIRPPRVQLTYEVEKGDAIEVKELPFVVGVVGDLAGQSEIEQPKLRDRKFVNIDRDNFDDVMKAIEPR
AAFQVENRLSPEGGKFAVDLKFRSLSDFSPDEVVEQVEPLRRLLEARSKLADLRNKLAGNDKLEDLLSEVLKNTQQLQEL
AKGTGGDKDGE*
MAKKESIQKSLQKIRPPRVQLTYEVEKGDAIEVKELPFVVGVVGDLAGQSEIEQPKLRDRKFVNIDRDNFDDVMKAIEPR
AAFQVENRLSPEGGKFAVDLKFRSLSDFSPDEVVEQVEPLRRLLEARSKLADLRNKLAGNDKLEDLLSEVLKNTQQLQEL
AKGTGGDKDGE*
Nucleotide sequence: 516 bp
>T6CP015180 NZ_HG938370:351881-352396 [Burkholderia cenocepacia H111] [TssB]
ATGGCCAAGAAAGAAAGCATTCAGAAAAGCTTGCAGAAAATACGGCCGCCGCGCGTCCAGCTGACCTACGAGGTCGAGAA
GGGCGATGCGATCGAGGTGAAGGAACTGCCGTTCGTCGTCGGGGTCGTCGGCGATCTGGCGGGCCAGTCCGAAATCGAGC
AGCCGAAGCTGCGCGACCGCAAGTTCGTCAATATCGACCGCGACAATTTCGACGACGTGATGAAGGCGATCGAGCCGCGC
GCCGCGTTCCAGGTGGAAAACCGCCTGAGCCCGGAAGGCGGCAAGTTCGCGGTCGACCTGAAGTTCCGCTCGCTGTCGGA
TTTCAGCCCGGACGAAGTCGTCGAACAGGTCGAGCCGCTGCGCCGCCTGCTCGAGGCGCGCTCGAAGCTCGCCGACCTGC
GCAACAAGCTTGCCGGCAACGACAAGCTCGAGGATCTGCTGTCCGAGGTGCTGAAGAACACGCAGCAACTGCAGGAGCTC
GCGAAGGGCACCGGCGGCGACAAAGACGGCGAATGA
ATGGCCAAGAAAGAAAGCATTCAGAAAAGCTTGCAGAAAATACGGCCGCCGCGCGTCCAGCTGACCTACGAGGTCGAGAA
GGGCGATGCGATCGAGGTGAAGGAACTGCCGTTCGTCGTCGGGGTCGTCGGCGATCTGGCGGGCCAGTCCGAAATCGAGC
AGCCGAAGCTGCGCGACCGCAAGTTCGTCAATATCGACCGCGACAATTTCGACGACGTGATGAAGGCGATCGAGCCGCGC
GCCGCGTTCCAGGTGGAAAACCGCCTGAGCCCGGAAGGCGGCAAGTTCGCGGTCGACCTGAAGTTCCGCTCGCTGTCGGA
TTTCAGCCCGGACGAAGTCGTCGAACAGGTCGAGCCGCTGCGCCGCCTGCTCGAGGCGCGCTCGAAGCTCGCCGACCTGC
GCAACAAGCTTGCCGGCAACGACAAGCTCGAGGATCTGCTGTCCGAGGTGCTGAAGAACACGCAGCAACTGCAGGAGCTC
GCGAAGGGCACCGGCGGCGACAAAGACGGCGAATGA