Detailed information of component protein


Summary

Component ID T6CP015178
Component protein type TssK
T6SS ID (Type) T6SS01196 experimental (Type i4b)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS01705
Coordinate (Strand) 348769..350115 (-)
NCBI ID WP_006477098.1
RefSeq NZ_HG938370
Uniprot ID B4E6R0_BURCJ, A0A364GSZ1_9BURK, A0A3N8HNQ3_9BURK, A0A0H2XRS4_BURCA, A2VTE5_9BURK, B1JUN4_BURCC, A0A109ELU1_9BURK
KEGG ID bcj:BCAL0338, bcn:Bcen_2642, bcm:Bcenmc03_0442
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1e-140 19..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESIQAIQPYNWGVRSVRIDRDALGSNVLRVAELALVFPDGALYAAPQADDLPPPIALDTLPDGINEFVFYLALHPLRENGTNYSDDPAAGFMTRFVSEQTSVADNFTDAAEADITFLKTQVKLIAHSEPRDQLLSVPLVRVRRTATSGFEIDDSFVPPCLAIEASPILHQRLRQLVDALQAKVNALYGFHREPSKNIIEFRSGDIASFWLLHTANAAFATLAHLHQHAALHPERLFQELLRLAGQLMTFSKGYTLADLPVYRHDDPGPSFARLDLMLRELLDTVISTRYFAITLDEVRPSFHLGRLDSGKIDDKTEFYLAVSADMPSVELVDAVPARFKVGAPDDVDKLVLSAMPGVRLSYTPQVPPAIPVRPGACYFALDSRSPLYERMLQAQSAMIYAPTGINDLKFELIAVTS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9971 - -


  Protein sequence: 449 a.a.    

>T6CP015178 NZ_HG938370:c350115-348769 [Burkholderia cenocepacia H111] [TssK]
MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESIQAIQPYNWGVRSVRIDRDALGSNVLRVAELALVFPDGALYAAPQA
DDLPPPIALDTLPDGINEFVFYLALHPLRENGTNYSDDPAAGFMTRFVSEQTSVADNFTDAAEADITFLKTQVKLIAHSE
PRDQLLSVPLVRVRRTATSGFEIDDSFVPPCLAIEASPILHQRLRQLVDALQAKVNALYGFHREPSKNIIEFRSGDIASF
WLLHTANAAFATLAHLHQHAALHPERLFQELLRLAGQLMTFSKGYTLADLPVYRHDDPGPSFARLDLMLRELLDTVISTR
YFAITLDEVRPSFHLGRLDSGKIDDKTEFYLAVSADMPSVELVDAVPARFKVGAPDDVDKLVLSAMPGVRLSYTPQVPPA
IPVRPGACYFALDSRSPLYERMLQAQSAMIYAPTGINDLKFELIAVTS*

  Nucleotide sequence: 1347 bp    

>T6CP015178 NZ_HG938370:c350115-348769 [Burkholderia cenocepacia H111] [TssK]
ATGAGTTATTCGGCCAAGGTGCTGTGGGGGGAAGGGCTGTTCCTCCGGCCTCAACACTTTCAGCGGCAGGACGCGTACCA
CGAGGCGCGCCTGTTCGAGTCCATCCAGGCGATCCAGCCATACAACTGGGGCGTGCGCTCGGTGCGCATCGACCGCGACG
CGCTCGGCAGCAATGTGCTGCGGGTGGCCGAACTCGCGCTCGTGTTCCCGGACGGCGCGCTGTATGCCGCGCCGCAGGCC
GACGACCTGCCGCCGCCGATCGCACTGGATACGTTGCCCGACGGCATCAACGAATTCGTGTTCTATCTCGCGCTGCACCC
GCTGCGCGAGAACGGCACCAACTACAGCGACGATCCGGCCGCCGGCTTCATGACGCGGTTCGTCAGCGAGCAGACGAGCG
TCGCCGACAACTTCACCGACGCCGCCGAAGCCGACATCACGTTCCTGAAGACGCAGGTCAAGCTGATCGCACACAGCGAG
CCGCGCGACCAGCTGCTGTCGGTGCCGCTCGTACGCGTGCGCCGCACCGCGACGTCCGGCTTCGAGATCGACGACAGCTT
CGTGCCGCCGTGCCTCGCGATCGAAGCGTCGCCGATCCTGCACCAGCGGCTGCGCCAGCTGGTCGACGCGCTGCAGGCGA
AGGTGAACGCGCTGTACGGCTTTCACCGCGAGCCGTCGAAGAACATCATCGAGTTCCGCTCGGGCGACATCGCGTCGTTC
TGGCTGCTGCACACGGCGAACGCCGCATTCGCGACGCTCGCGCACCTGCACCAGCATGCGGCGCTGCATCCGGAGCGACT
GTTCCAGGAGCTGCTGCGCCTCGCCGGCCAGTTGATGACGTTCTCGAAGGGCTATACGCTCGCCGACCTGCCCGTGTACC
GCCACGACGATCCGGGCCCGAGCTTCGCGCGTCTCGACCTGATGCTGCGCGAACTGCTCGACACCGTGATCTCGACGCGC
TATTTCGCGATCACGCTCGACGAGGTGCGCCCGTCGTTCCACCTCGGCCGCCTCGATTCCGGCAAGATCGACGACAAGAC
CGAGTTCTACCTCGCAGTGTCCGCGGACATGCCGAGCGTCGAGCTCGTCGATGCGGTGCCGGCCCGCTTCAAGGTCGGCG
CGCCGGACGACGTCGACAAGCTCGTGCTGTCGGCAATGCCCGGCGTGCGGCTGTCGTACACGCCGCAGGTGCCGCCCGCG
ATTCCGGTGCGCCCCGGCGCGTGCTACTTCGCGCTCGATTCGCGCAGCCCGCTGTACGAGCGCATGCTGCAGGCCCAGTC
CGCGATGATCTACGCGCCGACTGGCATCAATGACCTGAAATTCGAACTGATCGCGGTCACATCATGA