Detailed information of component protein
Summary
| Component ID | T6CP015177 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS01196  (Type i4b) |
| Strain | Burkholderia cenocepacia H111 |
| Replicon | chromosome |
| Sequence | Protein sequence (261 a.a.); Nucleotide sequence (783 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | I35_RS01700 |
| Coordinate (Strand) | 347990..348772 (-) |
| NCBI ID | WP_006494424.1 |
| RefSeq | NZ_HG938370 |
| Uniprot ID | A0A144RZN6_9BURK |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 8.6e-58 | 31..229 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-208 | MSYAPSLFGDNAPAPLHTPASTDSAFQARSLLDLLYDGFFMLFLLKNGREPDSASEFSTRIQEFLSDFERGAKKLNIAAEDVYGAKFAFCAAIDEMVLSSQFKIRADWERRPLQLVLFGEQLAGEKFFQYLEEGRAQGAARLQSLEVFHMCLLLGFQGKYLLEGPEKLAYLTARLGDEIAHMKGKRAPFAPHWPLPDQIAHRLKREVP |
| Transmembrane helix | 209-231 | VWAIGTVFALVALLGYLGLNTYL |
| Inside | 232-260 | KDKTLQALSPYSQVIKVGPESANLTISLP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9848 | - | - |
Protein sequence: 261 a.a.
>T6CP015177 NZ_HG938370:c348772-347990 [Burkholderia cenocepacia H111] [TssL]
MSYAPSLFGDNAPAPLHTPASTDSAFQARSLLDLLYDGFFMLFLLKNGREPDSASEFSTRIQEFLSDFERGAKKLNIAAE
DVYGAKFAFCAAIDEMVLSSQFKIRADWERRPLQLVLFGEQLAGEKFFQYLEEGRAQGAARLQSLEVFHMCLLLGFQGKY
LLEGPEKLAYLTARLGDEIAHMKGKRAPFAPHWPLPDQIAHRLKREVPVWAIGTVFALVALLGYLGLNTYLKDKTLQALS
PYSQVIKVGPESANLTISLP*
MSYAPSLFGDNAPAPLHTPASTDSAFQARSLLDLLYDGFFMLFLLKNGREPDSASEFSTRIQEFLSDFERGAKKLNIAAE
DVYGAKFAFCAAIDEMVLSSQFKIRADWERRPLQLVLFGEQLAGEKFFQYLEEGRAQGAARLQSLEVFHMCLLLGFQGKY
LLEGPEKLAYLTARLGDEIAHMKGKRAPFAPHWPLPDQIAHRLKREVPVWAIGTVFALVALLGYLGLNTYLKDKTLQALS
PYSQVIKVGPESANLTISLP*
Nucleotide sequence: 783 bp
>T6CP015177 NZ_HG938370:c348772-347990 [Burkholderia cenocepacia H111] [TssL]
ATGAGCTACGCGCCTTCCTTGTTCGGCGACAACGCGCCGGCACCGCTGCACACCCCGGCGTCGACGGACTCCGCGTTCCA
GGCCCGTTCGCTGCTCGATTTGCTGTACGACGGGTTCTTCATGCTGTTCCTGCTCAAGAACGGACGGGAGCCGGACAGCG
CCAGCGAGTTCAGCACGCGGATCCAGGAATTCCTGTCGGATTTCGAGCGCGGCGCGAAGAAGCTGAATATCGCCGCCGAG
GACGTGTACGGCGCGAAGTTCGCGTTCTGCGCGGCCATCGACGAGATGGTGCTGTCGTCGCAGTTCAAGATCCGCGCGGA
CTGGGAACGCCGGCCGCTGCAGCTCGTGTTGTTCGGCGAGCAGCTCGCCGGCGAGAAGTTCTTCCAGTATCTCGAGGAAG
GTCGTGCGCAGGGTGCGGCACGGCTGCAGTCGCTCGAGGTGTTCCATATGTGCCTGCTGCTCGGGTTCCAGGGCAAGTAC
CTGCTCGAAGGGCCGGAAAAGCTCGCTTACCTGACCGCGCGGCTGGGCGACGAGATCGCGCACATGAAGGGCAAGCGCGC
GCCGTTCGCGCCGCACTGGCCGCTGCCGGACCAGATCGCGCACCGGTTGAAGCGCGAGGTGCCGGTGTGGGCGATCGGGA
CCGTGTTCGCGCTGGTGGCGCTGCTCGGGTACCTCGGGCTCAACACGTACCTGAAGGACAAGACGCTGCAAGCGCTCTCG
CCGTATTCGCAGGTGATCAAGGTCGGGCCGGAGTCGGCCAACCTGACGATCTCGTTGCCGTAA
ATGAGCTACGCGCCTTCCTTGTTCGGCGACAACGCGCCGGCACCGCTGCACACCCCGGCGTCGACGGACTCCGCGTTCCA
GGCCCGTTCGCTGCTCGATTTGCTGTACGACGGGTTCTTCATGCTGTTCCTGCTCAAGAACGGACGGGAGCCGGACAGCG
CCAGCGAGTTCAGCACGCGGATCCAGGAATTCCTGTCGGATTTCGAGCGCGGCGCGAAGAAGCTGAATATCGCCGCCGAG
GACGTGTACGGCGCGAAGTTCGCGTTCTGCGCGGCCATCGACGAGATGGTGCTGTCGTCGCAGTTCAAGATCCGCGCGGA
CTGGGAACGCCGGCCGCTGCAGCTCGTGTTGTTCGGCGAGCAGCTCGCCGGCGAGAAGTTCTTCCAGTATCTCGAGGAAG
GTCGTGCGCAGGGTGCGGCACGGCTGCAGTCGCTCGAGGTGTTCCATATGTGCCTGCTGCTCGGGTTCCAGGGCAAGTAC
CTGCTCGAAGGGCCGGAAAAGCTCGCTTACCTGACCGCGCGGCTGGGCGACGAGATCGCGCACATGAAGGGCAAGCGCGC
GCCGTTCGCGCCGCACTGGCCGCTGCCGGACCAGATCGCGCACCGGTTGAAGCGCGAGGTGCCGGTGTGGGCGATCGGGA
CCGTGTTCGCGCTGGTGGCGCTGCTCGGGTACCTCGGGCTCAACACGTACCTGAAGGACAAGACGCTGCAAGCGCTCTCG
CCGTATTCGCAGGTGATCAAGGTCGGGCCGGAGTCGGCCAACCTGACGATCTCGTTGCCGTAA