Detailed information of component protein


Summary

Component ID T6CP014897
Component protein type TssI
T6SS ID (Type) T6SS01170 experimental (Type i1)
Strain Pectobacterium brasiliense 1692
Replicon chromosome
Sequence Protein sequence (679 a.a.); Nucleotide sequence (2037 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) GT391_RS12360
Coordinate (Strand) 2772336..2774372 (+)
NCBI ID WP_010285378.1
RefSeq NZ_CP047495
Uniprot ID A0A6I6X0F9_9GAMM
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.2e-89 30..327
Phage_base_V PF04717.14 5.7e-14 385..450
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-678 VANSTGLQFTVKVGALEAGTFAVVDFRLDEGLNRPFSLSLSLASALPDVDFGAVLDQPCELMIWYEGELKRRVSGIISGFTQGDTGFRRTRYQIEVRPALWRLGLRTNARIFQAQKPEAIIGALLEEAGITDYAFALRNEHAVREYCVQYRESDLAFITRLAAEEGMYFFHEYEEGKHRVVFADDAGALTKGPELFFNLATQGLSEGEYVRRFHYAERVSTAEVELKDYSFKTPAYGLSHKKMSGELEHQRESYQHYDYPGRYKQDPSGKAFSGYRLDALRSGAVTSEGESNCAGLMPGNTFTLTEHPNAALNAVWQTVSVTHVGQQPQALEEESGGEPTTMSNSFAVVKGATTWRAAMPYKPMVDGPQIATVVGPLGEEIYCDPYGRVKLQFPWDRYGASNDQSSCWVRVSQGWAGGQYGMIAIPRIGHEVIVSFLEGDPDQPIVTGRTFHATNPTPYVLPAHKTRTTLRTDTHKGSGFNEVRFEDEATREQIYYHAQKDMDGVINNIHRQSVGRDQHLSVDQDQFQRVTRHRHRTIGKDDFENIGQDHHQEIGRSFIQKIGASFKRFIGGGEVTRIEGSRQTTMSGSEETLIGAHQRVLVNTDSYLKAADIVLEAGQALTIKAPGGFIKIDSAGVTISGTIVKINDGGAAGVGTAPVSITPEDPTKPTLPDAPDRR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9702 - -


  Protein sequence: 679 a.a.    

>T6CP014897 NZ_CP047495:2772336-2774372 [Pectobacterium brasiliense] [TssI]
VANSTGLQFTVKVGALEAGTFAVVDFRLDEGLNRPFSLSLSLASALPDVDFGAVLDQPCELMIWYEGELKRRVSGIISGF
TQGDTGFRRTRYQIEVRPALWRLGLRTNARIFQAQKPEAIIGALLEEAGITDYAFALRNEHAVREYCVQYRESDLAFITR
LAAEEGMYFFHEYEEGKHRVVFADDAGALTKGPELFFNLATQGLSEGEYVRRFHYAERVSTAEVELKDYSFKTPAYGLSH
KKMSGELEHQRESYQHYDYPGRYKQDPSGKAFSGYRLDALRSGAVTSEGESNCAGLMPGNTFTLTEHPNAALNAVWQTVS
VTHVGQQPQALEEESGGEPTTMSNSFAVVKGATTWRAAMPYKPMVDGPQIATVVGPLGEEIYCDPYGRVKLQFPWDRYGA
SNDQSSCWVRVSQGWAGGQYGMIAIPRIGHEVIVSFLEGDPDQPIVTGRTFHATNPTPYVLPAHKTRTTLRTDTHKGSGF
NEVRFEDEATREQIYYHAQKDMDGVINNIHRQSVGRDQHLSVDQDQFQRVTRHRHRTIGKDDFENIGQDHHQEIGRSFIQ
KIGASFKRFIGGGEVTRIEGSRQTTMSGSEETLIGAHQRVLVNTDSYLKAADIVLEAGQALTIKAPGGFIKIDSAGVTIS
GTIVKINDGGAAGVGTAPVSITPEDPTKPTLPDAPDRR*

  Nucleotide sequence: 2037 bp    

>T6CP014897 NZ_CP047495:2772336-2774372 [Pectobacterium brasiliense] [TssI]
GTGGCAAACAGTACAGGATTACAGTTCACCGTAAAGGTCGGTGCCCTGGAAGCAGGCACTTTCGCGGTGGTGGATTTCAG
GCTGGATGAAGGGCTGAACCGGCCTTTCAGCCTGTCGCTGAGTCTGGCGAGCGCGTTGCCGGATGTCGATTTCGGCGCGG
TGCTGGACCAGCCGTGCGAGCTGATGATTTGGTATGAAGGTGAACTGAAACGTCGGGTCAGCGGGATTATCAGTGGCTTC
ACGCAGGGCGACACCGGATTCCGGCGCACGCGCTATCAGATAGAAGTCCGTCCTGCCCTGTGGCGACTGGGATTACGCAC
CAACGCCCGCATCTTTCAGGCGCAGAAGCCGGAAGCGATTATCGGCGCGCTGCTGGAAGAGGCGGGCATTACCGACTACG
CCTTTGCGCTGCGTAACGAGCATGCGGTGCGGGAATACTGTGTGCAGTATCGGGAAAGCGATTTAGCCTTTATCACCCGG
CTGGCTGCCGAAGAGGGCATGTATTTCTTTCACGAATACGAAGAGGGCAAGCACCGGGTGGTGTTTGCCGACGATGCGGG
CGCACTGACCAAAGGCCCCGAGCTGTTCTTCAATCTGGCGACGCAGGGGCTGAGTGAGGGCGAATATGTCCGGCGTTTCC
ACTACGCGGAGCGGGTGAGTACGGCCGAAGTCGAGCTGAAAGACTACAGCTTCAAAACACCGGCTTACGGGCTGTCGCAC
AAGAAGATGAGTGGTGAGTTGGAACACCAGCGTGAAAGCTATCAGCATTACGACTATCCGGGGCGCTATAAGCAAGACCC
GAGCGGCAAGGCGTTCAGCGGTTACCGGCTGGATGCGCTGCGCTCAGGGGCGGTGACGAGCGAAGGGGAATCCAACTGCG
CGGGGCTGATGCCGGGCAACACGTTTACCCTGACGGAGCACCCGAATGCAGCGCTGAATGCGGTGTGGCAGACGGTGAGC
GTGACGCACGTCGGGCAACAGCCGCAGGCGCTGGAAGAGGAAAGCGGCGGCGAACCGACGACAATGAGCAACAGTTTTGC
CGTGGTGAAAGGCGCAACGACGTGGCGTGCTGCCATGCCCTACAAACCGATGGTGGACGGCCCGCAAATCGCCACCGTCG
TCGGCCCGTTGGGGGAAGAAATCTACTGCGACCCGTATGGTCGGGTGAAACTGCAATTCCCGTGGGATCGCTACGGTGCG
AGCAATGACCAGAGTTCCTGCTGGGTGCGCGTCAGTCAGGGCTGGGCGGGCGGCCAGTACGGCATGATTGCGATCCCGCG
TATCGGCCATGAAGTGATCGTGAGTTTCCTTGAAGGCGATCCGGACCAGCCGATTGTCACCGGGCGTACTTTCCACGCCA
CCAACCCGACGCCGTACGTTTTACCGGCACATAAAACGCGCACCACGCTGCGTACCGATACCCATAAAGGCAGTGGTTTC
AACGAGGTGCGTTTTGAGGATGAGGCGACGCGTGAGCAAATTTATTATCACGCTCAGAAAGATATGGATGGCGTCATCAA
CAATATCCACCGGCAGAGCGTAGGACGCGATCAGCACCTCAGCGTGGATCAGGATCAGTTCCAACGGGTCACGCGTCACC
GCCACCGAACGATAGGCAAAGATGATTTTGAAAACATCGGCCAGGATCATCATCAGGAAATTGGCCGGAGTTTTATTCAG
AAAATTGGTGCGTCGTTCAAACGTTTCATCGGCGGGGGAGAGGTTACCCGTATCGAGGGGAGCCGTCAGACCACGATGTC
CGGTTCTGAAGAGACGCTGATCGGCGCGCATCAGCGCGTTCTGGTGAATACGGACAGTTACCTGAAAGCTGCGGATATCG
TGCTGGAAGCGGGGCAGGCTCTGACCATTAAAGCGCCGGGTGGCTTTATCAAGATTGATAGCGCGGGCGTGACGATTTCC
GGGACGATTGTGAAAATCAACGATGGCGGTGCGGCTGGCGTAGGGACTGCGCCAGTATCGATTACGCCAGAAGATCCGAC
GAAGCCTACGCTGCCCGATGCGCCAGACAGACGTTAA