Detailed information of component protein
Summary
| Component ID | T6CP014896 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01170  (Type i1) |
| Strain | Pectobacterium brasiliense 1692 |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | GT391_RS12355 |
| Coordinate (Strand) | 2771621..2772139 (+) |
| NCBI ID | WP_010285381.1 |
| RefSeq | NZ_CP047495 |
| Uniprot ID | A0A6I6X5V0_9GAMM |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1e-31 | 7..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MPTPCYISIEGKTQGNITAGAFTSDSVGNIYVEGHEDEMLVQEFKHIVTVPTDPQSGQPSGQRVHKPFKFTVALNKAVPLMYNSLASGEMLPTVTLKWYRTSVEGKQEHFFSTVLTDATIVDIDCKMPHCQDPSKLDYTQLIEVSLSYRKIDWEHTVAGTSGSDDWRAPVEA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9714 | - | - |
Protein sequence: 173 a.a.
>T6CP014896 NZ_CP047495:2771621-2772139 [Pectobacterium brasiliense] [TssD]
MPTPCYISIEGKTQGNITAGAFTSDSVGNIYVEGHEDEMLVQEFKHIVTVPTDPQSGQPSGQRVHKPFKFTVALNKAVPL
MYNSLASGEMLPTVTLKWYRTSVEGKQEHFFSTVLTDATIVDIDCKMPHCQDPSKLDYTQLIEVSLSYRKIDWEHTVAGT
SGSDDWRAPVEA*
MPTPCYISIEGKTQGNITAGAFTSDSVGNIYVEGHEDEMLVQEFKHIVTVPTDPQSGQPSGQRVHKPFKFTVALNKAVPL
MYNSLASGEMLPTVTLKWYRTSVEGKQEHFFSTVLTDATIVDIDCKMPHCQDPSKLDYTQLIEVSLSYRKIDWEHTVAGT
SGSDDWRAPVEA*
Nucleotide sequence: 519 bp
>T6CP014896 NZ_CP047495:2771621-2772139 [Pectobacterium brasiliense] [TssD]
ATGCCAACTCCATGCTATATCAGCATCGAAGGTAAAACTCAGGGCAACATTACTGCGGGTGCTTTCACTTCTGATTCTGT
CGGCAACATCTATGTGGAAGGCCACGAAGACGAAATGCTGGTTCAGGAATTCAAACACATCGTCACCGTACCGACCGACC
CACAGTCTGGTCAGCCGTCTGGTCAACGTGTGCACAAACCGTTCAAATTCACCGTCGCGCTGAACAAAGCCGTTCCGCTG
ATGTACAACTCTCTGGCATCCGGCGAAATGCTGCCGACCGTAACGCTGAAGTGGTATCGCACATCAGTTGAAGGGAAACA
GGAACATTTCTTCTCTACCGTACTGACCGATGCCACCATCGTTGACATCGACTGCAAAATGCCACACTGCCAGGACCCGT
CAAAACTGGACTACACCCAGTTGATCGAAGTGTCACTGTCCTACCGCAAAATCGATTGGGAGCACACCGTTGCCGGAACT
TCTGGTTCCGATGACTGGCGTGCACCGGTCGAAGCGTAA
ATGCCAACTCCATGCTATATCAGCATCGAAGGTAAAACTCAGGGCAACATTACTGCGGGTGCTTTCACTTCTGATTCTGT
CGGCAACATCTATGTGGAAGGCCACGAAGACGAAATGCTGGTTCAGGAATTCAAACACATCGTCACCGTACCGACCGACC
CACAGTCTGGTCAGCCGTCTGGTCAACGTGTGCACAAACCGTTCAAATTCACCGTCGCGCTGAACAAAGCCGTTCCGCTG
ATGTACAACTCTCTGGCATCCGGCGAAATGCTGCCGACCGTAACGCTGAAGTGGTATCGCACATCAGTTGAAGGGAAACA
GGAACATTTCTTCTCTACCGTACTGACCGATGCCACCATCGTTGACATCGACTGCAAAATGCCACACTGCCAGGACCCGT
CAAAACTGGACTACACCCAGTTGATCGAAGTGTCACTGTCCTACCGCAAAATCGATTGGGAGCACACCGTTGCCGGAACT
TCTGGTTCCGATGACTGGCGTGCACCGGTCGAAGCGTAA