Detailed information of component protein
Summary
| Component ID | T6CP014894 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS01170  (Type i1) |
| Strain | Pectobacterium brasiliense 1692 |
| Replicon | chromosome |
| Sequence | Protein sequence (1166 a.a.); Nucleotide sequence (3498 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 2764632..2768129 (+) |
| NCBI ID | WP_039320559.1 |
| RefSeq | NZ_CP047495 |
| Uniprot ID | A0A6I6X5N5_9GAMM |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-19 | MFKTIITFLRKQLPKLKPS |
| Transmembrane helix | 20-39 | WLLLGVLLWVVVLVLAWWLG |
| Outside | 40-53 | PRLTVGESRPLQGI |
| Transmembrane helix | 54-76 | WGRVVFTLVWLWLAFSYSAWLVW |
| Inside | 77-449 | RRVQQMRAERHEQQVIEQDPLQVYVDSQQTFLDRWLEAFQTQLGKRALYAMPWYLTIGLAGSGKSSLIHRANPANKMNPKLDAELRDVAAGQQVSSWVGESAVIWDPSGQLLAQPELEGDSLGQRHARLWQHLLQWLSENRRRQPLNGLVLTLDISWLAQAGVADRKAYAQVMRARLQEISVNINTRLPVYIALTRLDMLSGFDKVYRQLNREARQAVLGVTFTPQASNSKGWLEELERFWDEWVTHLNDNLPDMLLTQSDRSVRNSLFSFVRQLAGVKDYVMEVLTETLATGEDRAFLIRGVYVSSVYQQGVPFDAFAQSASRRYQLPEPINPALRGESNTFFVQRLFPDVIFPEASLAGENRLHSLYRRRR |
| Transmembrane helix | 450-472 | LSIGVGCMLLASLALIGSWHHFY |
| Outside | 473-1165 | RVNEEAGRNVLTKAQAFIGTNELEGQQGYGYQQLPRLNLIRDATLSFGNYHERTPLLADLGLYQGDKIGPHVEGTYLQMLNQRFLPAVMQGLLEDLNQAPANSEQKLTILRVMRMLDDASGRNKALVEQFMAQRWQKAFPGQGNVQEQLMQHLDYALEHTDWHKAREQKDAVAISTFAPFNGPITQAQQELSKLPMYQRVYQSLVMKATQVLPPDLAIRDEVGPTFDPVFSLRNDKAGSVPRLLTYPGFSDYYLKQDKALLELTALDAWVLGQRERAQFSEADRREILRQVNDRYITDYINQWQKVLANIDVQTLDTPEQALDILTDITGNDQPFQRVLTTVSDNTRIRKLADDDNDTAQSINTRTGRPFMTINAALSGRGEQGPLVQEVNQKLTDLYHYLDQIVNATDPGQAALKAVQARQGNKFADPVFALQQYARSLPAPLDRWVGQLAGESASLVTGLAMSSLNQEWLDKVVTPFNEKLADRYPFDPSSNKDVPLSEMEMFFMAGGTLDSFYQTNLKAMMESGMLEEGMASPLQAELVKQLERATRIRQTLFNAQGSLEVHFVLEPLELTANKRRSVLNLDGQLLEYSHGRRQKTPLVWPNSMRDGAESKLTLVPDDRERSPRSLSFSGPWAMFRLINSDQLTQVNENTFDVRFSLENGAMTYRVYTDASHNPFAGGLFSQFTLPDSLY |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9955 | - | - |
Protein sequence: 1166 a.a.
Nucleotide sequence: 3498 bp