Detailed information of component protein


Summary

Component ID T6CP014894
Component protein type TssM
T6SS ID (Type) T6SS01170 experimental (Type i1)
Strain Pectobacterium brasiliense 1692
Replicon chromosome
Sequence Protein sequence (1166 a.a.); Nucleotide sequence (3498 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) GT391_RS12340
Coordinate (Strand) 2764632..2768129 (+)
NCBI ID WP_039320559.1
RefSeq NZ_CP047495
Uniprot ID A0A6I6X5N5_9GAMM
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 1.9e-79 506..819
IcmF-related_N PF14331.8 2.3e-68 201..452
IcmF_C PF06744.14 2.4e-23 1038..1144
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-19 MFKTIITFLRKQLPKLKPS
Transmembrane helix 20-39 WLLLGVLLWVVVLVLAWWLG
Outside 40-53 PRLTVGESRPLQGI
Transmembrane helix 54-76 WGRVVFTLVWLWLAFSYSAWLVW
Inside 77-449 RRVQQMRAERHEQQVIEQDPLQVYVDSQQTFLDRWLEAFQTQLGKRALYAMPWYLTIGLAGSGKSSLIHRANPANKMNPKLDAELRDVAAGQQVSSWVGESAVIWDPSGQLLAQPELEGDSLGQRHARLWQHLLQWLSENRRRQPLNGLVLTLDISWLAQAGVADRKAYAQVMRARLQEISVNINTRLPVYIALTRLDMLSGFDKVYRQLNREARQAVLGVTFTPQASNSKGWLEELERFWDEWVTHLNDNLPDMLLTQSDRSVRNSLFSFVRQLAGVKDYVMEVLTETLATGEDRAFLIRGVYVSSVYQQGVPFDAFAQSASRRYQLPEPINPALRGESNTFFVQRLFPDVIFPEASLAGENRLHSLYRRRR
Transmembrane helix 450-472 LSIGVGCMLLASLALIGSWHHFY
Outside 473-1165 RVNEEAGRNVLTKAQAFIGTNELEGQQGYGYQQLPRLNLIRDATLSFGNYHERTPLLADLGLYQGDKIGPHVEGTYLQMLNQRFLPAVMQGLLEDLNQAPANSEQKLTILRVMRMLDDASGRNKALVEQFMAQRWQKAFPGQGNVQEQLMQHLDYALEHTDWHKAREQKDAVAISTFAPFNGPITQAQQELSKLPMYQRVYQSLVMKATQVLPPDLAIRDEVGPTFDPVFSLRNDKAGSVPRLLTYPGFSDYYLKQDKALLELTALDAWVLGQRERAQFSEADRREILRQVNDRYITDYINQWQKVLANIDVQTLDTPEQALDILTDITGNDQPFQRVLTTVSDNTRIRKLADDDNDTAQSINTRTGRPFMTINAALSGRGEQGPLVQEVNQKLTDLYHYLDQIVNATDPGQAALKAVQARQGNKFADPVFALQQYARSLPAPLDRWVGQLAGESASLVTGLAMSSLNQEWLDKVVTPFNEKLADRYPFDPSSNKDVPLSEMEMFFMAGGTLDSFYQTNLKAMMESGMLEEGMASPLQAELVKQLERATRIRQTLFNAQGSLEVHFVLEPLELTANKRRSVLNLDGQLLEYSHGRRQKTPLVWPNSMRDGAESKLTLVPDDRERSPRSLSFSGPWAMFRLINSDQLTQVNENTFDVRFSLENGAMTYRVYTDASHNPFAGGLFSQFTLPDSLY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9955 - -


  Protein sequence: 1166 a.a.    

>T6CP014894 NZ_CP047495:2764632-2768129 [Pectobacterium brasiliense] [TssM]
MFKTIITFLRKQLPKLKPSWLLLGVLLWVVVLVLAWWLGPRLTVGESRPLQGIWGRVVFTLVWLWLAFSYSAWLVWRRVQ
QMRAERHEQQVIEQDPLQVYVDSQQTFLDRWLEAFQTQLGKRALYAMPWYLTIGLAGSGKSSLIHRANPANKMNPKLDAE
LRDVAAGQQVSSWVGESAVIWDPSGQLLAQPELEGDSLGQRHARLWQHLLQWLSENRRRQPLNGLVLTLDISWLAQAGVA
DRKAYAQVMRARLQEISVNINTRLPVYIALTRLDMLSGFDKVYRQLNREARQAVLGVTFTPQASNSKGWLEELERFWDEW
VTHLNDNLPDMLLTQSDRSVRNSLFSFVRQLAGVKDYVMEVLTETLATGEDRAFLIRGVYVSSVYQQGVPFDAFAQSASR
RYQLPEPINPALRGESNTFFVQRLFPDVIFPEASLAGENRLHSLYRRRRLSIGVGCMLLASLALIGSWHHFYRVNEEAGR
NVLTKAQAFIGTNELEGQQGYGYQQLPRLNLIRDATLSFGNYHERTPLLADLGLYQGDKIGPHVEGTYLQMLNQRFLPAV
MQGLLEDLNQAPANSEQKLTILRVMRMLDDASGRNKALVEQFMAQRWQKAFPGQGNVQEQLMQHLDYALEHTDWHKAREQ
KDAVAISTFAPFNGPITQAQQELSKLPMYQRVYQSLVMKATQVLPPDLAIRDEVGPTFDPVFSLRNDKAGSVPRLLTYPG
FSDYYLKQDKALLELTALDAWVLGQRERAQFSEADRREILRQVNDRYITDYINQWQKVLANIDVQTLDTPEQALDILTDI
TGNDQPFQRVLTTVSDNTRIRKLADDDNDTAQSINTRTGRPFMTINAALSGRGEQGPLVQEVNQKLTDLYHYLDQIVNAT
DPGQAALKAVQARQGNKFADPVFALQQYARSLPAPLDRWVGQLAGESASLVTGLAMSSLNQEWLDKVVTPFNEKLADRYP
FDPSSNKDVPLSEMEMFFMAGGTLDSFYQTNLKAMMESGMLEEGMASPLQAELVKQLERATRIRQTLFNAQGSLEVHFVL
EPLELTANKRRSVLNLDGQLLEYSHGRRQKTPLVWPNSMRDGAESKLTLVPDDRERSPRSLSFSGPWAMFRLINSDQLTQ
VNENTFDVRFSLENGAMTYRVYTDASHNPFAGGLFSQFTLPDSLY*

  Nucleotide sequence: 3498 bp    

>T6CP014894 NZ_CP047495:2764632-2768129 [Pectobacterium brasiliense] [TssM]
ATGTTTAAAACAATCATAACTTTTCTACGCAAGCAGTTGCCTAAACTGAAACCCTCCTGGTTACTTTTGGGCGTGCTGCT
GTGGGTCGTCGTGTTGGTTCTGGCCTGGTGGCTGGGGCCGCGTTTGACGGTGGGCGAGTCGCGCCCGTTGCAGGGAATCT
GGGGCCGCGTGGTATTCACGCTGGTTTGGCTGTGGCTGGCGTTTTCCTACAGCGCCTGGCTGGTCTGGCGTCGCGTGCAG
CAGATGCGGGCGGAGCGTCATGAGCAGCAGGTGATTGAACAGGATCCCTTGCAGGTGTATGTCGATAGCCAGCAAACATT
TCTCGATCGCTGGCTGGAGGCGTTTCAGACCCAGTTGGGTAAACGCGCGCTGTACGCGATGCCCTGGTATCTGACGATTG
GTCTGGCTGGCAGCGGGAAAAGTAGCCTGATCCATCGTGCTAATCCGGCAAACAAAATGAATCCGAAGCTGGATGCGGAG
CTGCGAGACGTGGCGGCAGGTCAGCAGGTGAGCAGTTGGGTCGGTGAATCCGCGGTGATTTGGGACCCAAGCGGGCAGCT
ACTTGCCCAGCCTGAGCTGGAAGGCGATTCGCTCGGACAGCGTCATGCTCGACTGTGGCAGCACCTGTTGCAGTGGCTCA
GTGAAAACCGCCGCCGCCAGCCGCTCAACGGTCTGGTGCTCACGCTGGATATTTCCTGGCTGGCGCAGGCTGGCGTCGCC
GATCGCAAAGCTTACGCGCAGGTGATGCGCGCCCGCTTGCAGGAAATTTCCGTCAACATCAATACGCGTTTACCGGTGTA
TATCGCGCTGACCCGGCTGGATATGCTGAGCGGCTTCGATAAGGTCTATCGCCAGTTGAACCGCGAGGCGCGTCAGGCCG
TATTAGGGGTGACGTTTACGCCGCAGGCGAGCAACAGCAAAGGCTGGTTAGAAGAGCTGGAGCGCTTCTGGGACGAGTGG
GTCACGCACCTGAATGACAACCTGCCGGATATGCTGCTGACGCAATCCGACAGAAGCGTGCGCAATTCGCTGTTCTCGTT
CGTTCGCCAGTTGGCTGGAGTGAAAGATTACGTGATGGAAGTGCTGACAGAAACGTTAGCGACGGGCGAGGATCGCGCGT
TCCTGATCCGCGGCGTCTACGTCAGCTCGGTCTACCAACAAGGGGTGCCGTTCGATGCCTTTGCGCAATCGGCTTCCCGA
CGCTATCAACTGCCAGAGCCGATTAACCCTGCGCTGCGCGGTGAATCGAATACGTTCTTTGTGCAGCGTCTCTTCCCTGA
CGTCATTTTTCCGGAGGCCAGTCTGGCTGGGGAAAACCGGCTGCATAGCCTCTATCGCCGGCGTCGGCTGAGTATTGGCG
TGGGCTGCATGTTACTTGCCAGTCTGGCGCTGATTGGCAGTTGGCACCATTTCTATCGGGTCAATGAAGAGGCGGGACGT
AACGTCCTGACGAAAGCGCAGGCGTTCATTGGCACCAATGAGCTGGAAGGCCAGCAGGGTTACGGCTATCAGCAGTTGCC
GCGTCTGAATTTGATTCGCGATGCGACCTTATCCTTTGGTAATTACCACGAGCGCACGCCGCTGCTGGCCGATCTTGGCC
TGTATCAGGGTGACAAGATTGGGCCTCATGTTGAAGGCACCTATCTGCAAATGCTGAATCAGCGCTTTCTCCCGGCAGTG
ATGCAAGGGCTGCTGGAAGATCTGAATCAGGCACCGGCCAATAGCGAGCAAAAACTGACGATTCTGCGCGTGATGCGGAT
GCTGGATGATGCGTCAGGGCGCAATAAAGCGCTGGTCGAACAGTTTATGGCGCAGCGCTGGCAGAAGGCATTTCCCGGAC
AGGGCAACGTGCAGGAACAGCTGATGCAGCATCTGGATTACGCCCTTGAGCACACCGACTGGCACAAGGCACGTGAGCAG
AAAGACGCGGTAGCGATCAGCACGTTCGCACCATTTAATGGACCGATTACGCAGGCCCAGCAGGAACTGAGCAAGCTGCC
AATGTATCAGCGCGTTTATCAGAGTCTGGTCATGAAGGCGACACAGGTGCTGCCACCGGATTTAGCGATTCGTGATGAAG
TCGGGCCGACCTTTGATCCGGTGTTTTCCCTGCGTAATGACAAAGCGGGCAGCGTGCCTCGGCTGCTGACGTATCCCGGC
TTTAGCGATTATTACCTCAAGCAGGACAAAGCGCTGTTAGAGCTGACGGCACTGGACGCCTGGGTGCTGGGACAGCGCGA
GCGTGCGCAGTTCAGCGAGGCCGATCGGCGGGAAATTCTGCGTCAGGTGAATGACCGCTACATTACGGATTACATCAACC
AATGGCAGAAAGTGCTGGCGAACATTGATGTGCAGACGCTCGATACGCCGGAGCAGGCACTCGACATTCTCACGGATATT
ACCGGCAACGATCAGCCCTTCCAGCGCGTGCTGACGACGGTCAGTGATAACACCCGCATTCGTAAGCTGGCCGATGATGA
TAACGATACGGCGCAGAGTATTAACACGCGTACTGGTCGTCCGTTTATGACTATCAATGCGGCGCTGAGCGGACGCGGTG
AGCAGGGGCCGCTGGTGCAAGAGGTCAATCAGAAGCTGACGGATCTCTATCACTATCTCGATCAGATCGTTAACGCGACC
GATCCGGGACAGGCGGCGTTGAAAGCGGTGCAGGCACGGCAGGGGAATAAATTTGCCGATCCGGTATTCGCCTTACAGCA
ATACGCCCGTAGCCTTCCTGCGCCGCTGGATCGCTGGGTAGGGCAATTAGCCGGAGAGAGCGCGAGTCTGGTGACCGGGT
TGGCGATGTCGTCGCTGAATCAGGAATGGCTGGATAAGGTCGTGACGCCATTCAATGAGAAGCTGGCGGATCGTTACCCC
TTCGACCCGTCATCGAACAAGGATGTGCCGCTATCGGAAATGGAAATGTTCTTCATGGCCGGCGGGACGTTGGACAGCTT
CTATCAAACCAACCTCAAGGCGATGATGGAGAGCGGCATGCTGGAAGAAGGCATGGCATCCCCTCTGCAGGCAGAGCTGG
TGAAACAGCTTGAACGCGCTACCCGCATCCGCCAGACCCTGTTTAATGCGCAGGGCAGCCTGGAAGTACATTTCGTTCTG
GAACCGCTGGAACTGACGGCGAACAAGCGCCGCAGCGTGCTGAATCTGGACGGACAGCTGCTGGAATACAGTCACGGTCG
TCGCCAGAAAACGCCGTTGGTGTGGCCAAACAGTATGCGCGACGGGGCTGAGAGCAAGCTGACGCTGGTGCCGGACGATC
GTGAGCGTTCACCGCGCAGCCTGAGCTTTAGCGGGCCGTGGGCGATGTTCCGCTTAATCAATAGCGATCAGCTGACTCAG
GTGAATGAGAACACCTTTGACGTGCGCTTCTCGCTGGAAAATGGCGCGATGACGTATCGCGTGTATACCGATGCCAGCCA
TAACCCGTTTGCCGGTGGTCTGTTCAGCCAGTTCACGCTGCCTGACTCGCTTTATTAA