Detailed information of component protein


Summary

Component ID T6CP014893
Component protein type TssA
T6SS ID (Type) T6SS01170 experimental (Type i1)
Strain Pectobacterium brasiliense 1692
Replicon chromosome
Sequence Protein sequence (475 a.a.); Nucleotide sequence (1425 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) GT391_RS12335
Coordinate (Strand) 2763183..2764607 (+)
NCBI ID WP_039320555.1
RefSeq NZ_CP047495
Uniprot ID A0A6I6X752_9GAMM
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 2.4e-79 223..468
ImpA_N PF06812.14 3.5e-15 23..110
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-474 MHAHPWCKRLQTSLPDEMLRAAVLPDDPLWEKVETELVKLGSLAHNQVDLNVVAGYCLTLLESKTKDMRVLVQLLRCLQHPAKATPFSTALMLLDSWLESYWVPAWPASPVQKQKLMIQIVRRFESVLPRIAESASSAELEQLQQLTEQVATRWGELASDKAALMDELVQGVKRARQRQQAQEQANQTAKPTPAASSGRGAGGSETSASAASTPVSSVEINSSDERGWRQTQLNVAALLVERHPDSPMGYRLRRHAIWSGIATPPMSSKGNKTQLAPVSSDRVDEYQSALAQADLALWERIEQSLVLAPYWFDGHMLSASVASRLGHASVATAIAEELSAFIQRLPELRELAFSDGAPFLTGKCSQWLQSSQPVRGGGGARQDDLATEAAACRDEKGIGAAMQLLDERMRRLKEPRDRFYAELVLADLLAEEGMKSLAAQHYQHMWQESQQLGLMQWEPGMVSRVERLAASRKK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9946 - -


  Protein sequence: 475 a.a.    

>T6CP014893 NZ_CP047495:2763183-2764607 [Pectobacterium brasiliense] [TssA]
MHAHPWCKRLQTSLPDEMLRAAVLPDDPLWEKVETELVKLGSLAHNQVDLNVVAGYCLTLLESKTKDMRVLVQLLRCLQH
PAKATPFSTALMLLDSWLESYWVPAWPASPVQKQKLMIQIVRRFESVLPRIAESASSAELEQLQQLTEQVATRWGELASD
KAALMDELVQGVKRARQRQQAQEQANQTAKPTPAASSGRGAGGSETSASAASTPVSSVEINSSDERGWRQTQLNVAALLV
ERHPDSPMGYRLRRHAIWSGIATPPMSSKGNKTQLAPVSSDRVDEYQSALAQADLALWERIEQSLVLAPYWFDGHMLSAS
VASRLGHASVATAIAEELSAFIQRLPELRELAFSDGAPFLTGKCSQWLQSSQPVRGGGGARQDDLATEAAACRDEKGIGA
AMQLLDERMRRLKEPRDRFYAELVLADLLAEEGMKSLAAQHYQHMWQESQQLGLMQWEPGMVSRVERLAASRKK*

  Nucleotide sequence: 1425 bp    

>T6CP014893 NZ_CP047495:2763183-2764607 [Pectobacterium brasiliense] [TssA]
ATGCATGCACATCCCTGGTGTAAACGCCTGCAAACCTCGTTGCCGGATGAGATGTTGCGCGCGGCGGTATTGCCGGACGA
TCCGCTCTGGGAAAAGGTCGAAACGGAGCTGGTCAAGCTCGGATCGCTGGCGCATAACCAGGTCGATCTTAACGTGGTGG
CGGGTTACTGCCTGACCTTGCTGGAAAGCAAAACCAAAGACATGCGGGTACTGGTGCAGCTATTGCGCTGCTTGCAGCAC
CCAGCCAAAGCGACACCGTTTTCTACCGCGTTGATGCTGCTGGACAGCTGGCTGGAGAGCTACTGGGTGCCCGCGTGGCC
TGCCAGTCCGGTTCAGAAACAGAAGTTGATGATCCAGATTGTTCGGCGTTTTGAGAGCGTGCTGCCCCGTATTGCAGAAA
GTGCATCCAGCGCAGAGCTGGAACAATTGCAGCAGTTGACGGAGCAGGTGGCGACCCGCTGGGGAGAGTTGGCGAGCGAC
AAAGCGGCACTGATGGATGAACTGGTGCAGGGCGTTAAGCGTGCCAGACAGCGACAGCAGGCGCAGGAACAGGCGAATCA
GACGGCAAAACCGACTCCGGCAGCCAGCAGCGGTAGAGGCGCGGGCGGGAGTGAAACCAGCGCCAGCGCGGCCTCGACGC
CCGTCAGTTCGGTGGAGATTAATTCATCTGATGAACGTGGCTGGCGGCAAACACAGCTGAACGTCGCGGCGCTGCTGGTT
GAGCGCCATCCCGATTCACCGATGGGTTACCGTCTGCGCCGCCACGCAATCTGGTCCGGTATTGCCACACCGCCGATGTC
GTCCAAAGGGAATAAAACCCAACTGGCACCCGTCTCGTCAGACCGCGTGGATGAATACCAAAGTGCGCTGGCTCAGGCCG
ATTTGGCGCTGTGGGAACGCATAGAACAAAGTCTGGTGCTGGCTCCTTACTGGTTTGATGGTCACATGCTGTCCGCCTCG
GTGGCGTCACGGTTGGGACATGCTTCCGTCGCGACGGCGATTGCCGAGGAGCTTTCTGCGTTTATTCAGCGCTTGCCGGA
GCTGCGTGAACTGGCGTTCAGCGATGGCGCGCCCTTTTTGACTGGGAAGTGTAGCCAGTGGTTGCAGTCCAGCCAGCCCG
TTCGCGGCGGCGGTGGGGCACGGCAGGACGATCTGGCAACGGAGGCAGCGGCCTGTCGGGACGAGAAAGGAATTGGGGCG
GCGATGCAGTTACTGGATGAACGCATGCGCCGCCTGAAAGAACCACGCGACCGCTTTTATGCCGAGTTGGTACTGGCGGA
TTTACTCGCCGAAGAAGGGATGAAATCACTGGCAGCACAGCACTATCAGCACATGTGGCAGGAAAGCCAACAATTGGGCC
TGATGCAATGGGAACCGGGAATGGTCAGTCGCGTGGAGCGGTTGGCGGCATCCCGCAAAAAATAA