Detailed information of component protein


Summary

Component ID T6CP014892
Component protein type TssH
T6SS ID (Type) T6SS01170 experimental (Type i1)
Strain Pectobacterium brasiliense 1692
Replicon chromosome
Sequence Protein sequence (866 a.a.); Nucleotide sequence (2598 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) GT391_RS12320
Coordinate (Strand) 2758473..2761070 (+)
NCBI ID WP_039320552.1
RefSeq NZ_CP047495
Uniprot ID A0A6I6X3L3_9GAMM
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.5e-36 602..763
AAA_lid_9 PF17871.3 1.2e-28 359..454
ClpB_D2-small PF10431.11 1.1e-08 769..843
AAA PF00004.31 7.3e-08 219..331
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-865 VIRIELPTLVERLNPVCRHMLEEAAALCIQHQGAEIRIEHLLLKMLETPLCDVRQILKRAGVDADELSSLLLPSSMDKEFDAGYPSFSPLLVEWLQDSWLLASAEFQHSRLRSGILLLVLLLTPNRYVAGAVSRPLVQINRELLRQQFDEWVKDSVETEVAVQSATAEQAAAANTQLSRYTQNVTESARQGQLDPVLCRDHEIDLMIDILSRRRKNNPIVVGEAGVGKSALIEGLALRIVAGAVPERLRDVELLTLDLGAMQAGASVKGEFEKRFKGVMQEVKDSPRPIILFIDEAHTLIGAGNQAGGLDVSNLLKPALARGELRTIAATTWSEYKKYVEKDAALSRRFQLVKVGEPNAEEATVILRGLRGIYEKAHGVLIDEDALQAAAQLSARYISGRQLPDKAIDVLDTASARVAINLTTPPRAVSQLQTRLHQQEMEITQLERQARIGLGNTEERLAELRDARETGAVQLAQLEADWQQQKTQVQRVIELRTALLDEEQSVDFDAVSAAAELAACEQALEALQQSSVLVSPHVDKTQIAAVIAEWTGVPLNRISQSEMDVVTRLPEFLGDLIKGQQLAIAHLHKHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVLQIADLMFGGRNYLTTINMSEYQEKHTVSRLIGSPPGYVGFGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRVIDCRNVVFFLTSNLGFQTIVNYAEQPDVLLDALYPELAAFFKPALLARMEVIPYLPLAHDTMVEIVQGKLSRLVSLLQQRFGAEVIIEDEVPEEILRLANRSENGARMLESVIDGALLPPVSLQLLQRMSAGEPVSRIHFRVEAGQFQTEVEG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9965 - -


  Protein sequence: 866 a.a.    

>T6CP014892 NZ_CP047495:2758473-2761070 [Pectobacterium brasiliense] [TssH]
VIRIELPTLVERLNPVCRHMLEEAAALCIQHQGAEIRIEHLLLKMLETPLCDVRQILKRAGVDADELSSLLLPSSMDKEF
DAGYPSFSPLLVEWLQDSWLLASAEFQHSRLRSGILLLVLLLTPNRYVAGAVSRPLVQINRELLRQQFDEWVKDSVETEV
AVQSATAEQAAAANTQLSRYTQNVTESARQGQLDPVLCRDHEIDLMIDILSRRRKNNPIVVGEAGVGKSALIEGLALRIV
AGAVPERLRDVELLTLDLGAMQAGASVKGEFEKRFKGVMQEVKDSPRPIILFIDEAHTLIGAGNQAGGLDVSNLLKPALA
RGELRTIAATTWSEYKKYVEKDAALSRRFQLVKVGEPNAEEATVILRGLRGIYEKAHGVLIDEDALQAAAQLSARYISGR
QLPDKAIDVLDTASARVAINLTTPPRAVSQLQTRLHQQEMEITQLERQARIGLGNTEERLAELRDARETGAVQLAQLEAD
WQQQKTQVQRVIELRTALLDEEQSVDFDAVSAAAELAACEQALEALQQSSVLVSPHVDKTQIAAVIAEWTGVPLNRISQS
EMDVVTRLPEFLGDLIKGQQLAIAHLHKHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVLQIADLMFGGRNYLTTINM
SEYQEKHTVSRLIGSPPGYVGFGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRVIDCRNVVF
FLTSNLGFQTIVNYAEQPDVLLDALYPELAAFFKPALLARMEVIPYLPLAHDTMVEIVQGKLSRLVSLLQQRFGAEVIIE
DEVPEEILRLANRSENGARMLESVIDGALLPPVSLQLLQRMSAGEPVSRIHFRVEAGQFQTEVEG*

  Nucleotide sequence: 2598 bp    

>T6CP014892 NZ_CP047495:2758473-2761070 [Pectobacterium brasiliense] [TssH]
GTGATTCGAATTGAACTGCCGACACTGGTTGAACGACTCAACCCCGTGTGCCGTCATATGCTGGAAGAAGCGGCGGCACT
CTGTATTCAACATCAGGGTGCGGAAATCCGTATTGAGCACCTGTTGCTGAAAATGCTGGAAACGCCGCTGTGTGATGTGC
GCCAGATCCTCAAGCGTGCGGGCGTGGATGCGGATGAGCTGTCTTCGCTGCTGTTGCCTTCCTCCATGGATAAAGAGTTT
GACGCGGGCTATCCCTCATTCTCTCCACTGCTGGTGGAGTGGTTACAGGATAGCTGGCTGCTGGCCTCGGCTGAATTCCA
ACATTCACGCCTGCGCAGCGGTATCTTGCTGTTGGTCCTGCTGCTGACGCCCAATCGCTATGTGGCTGGTGCAGTATCCC
GCCCGCTGGTGCAGATTAACCGTGAGCTTTTACGCCAGCAGTTTGATGAGTGGGTGAAGGATTCGGTGGAAACAGAGGTC
GCGGTGCAGTCTGCCACGGCTGAACAGGCAGCCGCGGCGAACACGCAGCTCTCTCGCTATACCCAAAACGTGACGGAATC
CGCCCGGCAGGGGCAACTGGATCCGGTGCTGTGCCGCGACCATGAAATCGATCTGATGATCGACATTCTCTCTCGTCGTC
GTAAAAACAACCCGATTGTGGTCGGGGAAGCAGGCGTCGGTAAAAGTGCGCTGATCGAAGGATTGGCGCTGCGCATCGTG
GCCGGTGCCGTGCCGGAAAGACTGCGGGATGTGGAACTGCTCACGCTCGATTTGGGAGCGATGCAGGCCGGTGCCTCGGT
GAAAGGCGAATTTGAGAAACGCTTCAAAGGCGTGATGCAGGAAGTGAAAGATTCACCGCGCCCTATCATTCTGTTTATTG
ATGAAGCGCATACGCTCATCGGGGCAGGCAATCAGGCGGGTGGGCTGGACGTTTCCAACCTGCTCAAGCCTGCACTGGCG
CGCGGTGAACTGCGCACTATCGCGGCCACGACCTGGAGCGAATACAAAAAATACGTCGAGAAGGACGCCGCGCTTTCCCG
CCGTTTCCAGCTCGTCAAAGTCGGTGAACCGAATGCGGAAGAAGCCACGGTTATTCTGCGTGGGCTGCGTGGCATCTATG
AAAAAGCGCACGGCGTCCTGATTGATGAAGATGCGCTTCAGGCGGCGGCACAGCTGTCAGCCCGCTATATCTCGGGCCGC
CAACTGCCCGATAAGGCCATCGACGTGCTGGATACGGCCAGCGCGCGCGTGGCGATTAACCTGACGACGCCACCGCGTGC
GGTCAGCCAGCTACAAACTCGCCTGCATCAGCAGGAGATGGAAATTACCCAGCTTGAGCGTCAGGCGCGTATTGGTCTGG
GCAATACCGAAGAACGGCTAGCTGAACTGCGTGATGCCCGCGAAACCGGTGCGGTACAGCTGGCACAGCTTGAAGCCGAC
TGGCAGCAGCAGAAAACACAGGTTCAGCGTGTGATTGAACTGCGTACGGCGCTGCTGGATGAAGAGCAGTCTGTCGATTT
TGATGCGGTGTCAGCCGCGGCGGAACTGGCAGCCTGTGAACAGGCGCTGGAAGCGCTGCAACAGTCCTCGGTACTGGTCT
CTCCTCACGTTGATAAAACGCAGATTGCGGCCGTTATTGCCGAGTGGACGGGCGTGCCGCTGAACCGCATCTCACAGAGT
GAAATGGATGTCGTCACACGCCTGCCTGAATTCCTGGGGGATTTAATTAAAGGGCAGCAGTTGGCGATTGCTCACTTGCA
TAAACATCTGCTGACTGCGCGTGCGGATCTTCGTCGTCCGGGGCGTCCGCTGGGGGCTTTCCTGCTGGTAGGGCCGAGCG
GCGTAGGTAAAACGGAAACCGTGCTCCAGATTGCCGACCTAATGTTTGGCGGACGCAACTATCTGACCACCATCAATATG
TCGGAATATCAGGAAAAACATACGGTTTCACGCCTGATCGGTTCGCCGCCGGGCTACGTCGGGTTTGGTGAAGGCGGCGT
GTTGACCGAAGCCATCCGCCAGAAACCGTATTCCGTGGTGCTGCTGGATGAAGTGGAGAAGGCGCACCCGGATGTCCTGA
ACCTGTTCTATCAAGCGTTTGATAAAGGTGAACTCGCCGATGGCGAAGGCCGGGTGATCGACTGCCGCAACGTGGTGTTC
TTCCTGACGTCCAACCTGGGGTTCCAGACGATTGTGAACTACGCCGAGCAGCCGGATGTGTTGCTGGATGCACTTTACCC
TGAGCTGGCGGCCTTCTTCAAACCCGCACTCCTGGCGCGTATGGAAGTCATCCCTTATCTGCCGCTGGCGCATGACACCA
TGGTTGAGATCGTACAAGGCAAACTGTCGCGTCTGGTGTCCCTGCTGCAACAGCGCTTTGGTGCGGAAGTCATCATTGAA
GACGAGGTGCCGGAAGAGATTCTGCGGTTGGCAAACCGCAGCGAAAACGGCGCGCGTATGCTCGAATCGGTAATTGATGG
CGCCTTGCTGCCGCCGGTCTCGCTACAGCTGCTGCAACGCATGTCTGCGGGTGAGCCTGTCAGCCGTATTCATTTCCGCG
TCGAAGCCGGCCAGTTCCAGACTGAGGTTGAGGGCTGA