Detailed information of component protein


Summary

Component ID T6CP014890
Component protein type TssK
T6SS ID (Type) T6SS01170 experimental (Type i1)
Strain Pectobacterium brasiliense 1692
Replicon chromosome
Sequence Protein sequence (446 a.a.); Nucleotide sequence (1338 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) GT391_RS12310
Coordinate (Strand) 2756330..2757667 (+)
NCBI ID WP_010282513.1
RefSeq NZ_CP047495
Uniprot ID A0A6I6X0E8_9GAMM, A0A094U7M4_9GAMM
KEGG ID pbra:B5S52_05500, pcv:BCS7_16365
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.6e-155 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-445 MSSRNRIIWREGLFIKPQHFQQQQRHTDYALHARLSALSDYFYGLQSLAINEEYLNFGRIALVNASGVMPDGTVFNIPGDDALPLPLEITDVALANQKVYLALPLAVNGVSEVGQPGQGIASRLQSHRHDVRDLHSDGGDIVSLEVGKVSLRLMLDRDDRSAYASLAIANILDKRPDGGLILDPNFMPCSISVTAIPTLKRFLGESAGLVAERARSLAQRIAAPGQQGVADVAEFMMLQLLNRAQPKLSHLARLGTLHPERLHETLVELCGELMTFTDESRLPPEFPAYRHEHQQASFEPLMMALRQALSTVLSPRAVSIQLKKQPYGVMVAMVGDAELMASAEFVLAVRARMPQEHLRKQLLQQTKIASSEKIRELISLQLPGIPLLPLPVAPRQLPYHAGYSYFQLDRQSPAWQVLVSGNTLAFHIAGEFPELDMQLWAIRGQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9894 - -


  Protein sequence: 446 a.a.    

>T6CP014890 NZ_CP047495:2756330-2757667 [Pectobacterium brasiliense] [TssK]
MSSRNRIIWREGLFIKPQHFQQQQRHTDYALHARLSALSDYFYGLQSLAINEEYLNFGRIALVNASGVMPDGTVFNIPGD
DALPLPLEITDVALANQKVYLALPLAVNGVSEVGQPGQGIASRLQSHRHDVRDLHSDGGDIVSLEVGKVSLRLMLDRDDR
SAYASLAIANILDKRPDGGLILDPNFMPCSISVTAIPTLKRFLGESAGLVAERARSLAQRIAAPGQQGVADVAEFMMLQL
LNRAQPKLSHLARLGTLHPERLHETLVELCGELMTFTDESRLPPEFPAYRHEHQQASFEPLMMALRQALSTVLSPRAVSI
QLKKQPYGVMVAMVGDAELMASAEFVLAVRARMPQEHLRKQLLQQTKIASSEKIRELISLQLPGIPLLPLPVAPRQLPYH
AGYSYFQLDRQSPAWQVLVSGNTLAFHIAGEFPELDMQLWAIRGQ*

  Nucleotide sequence: 1338 bp    

>T6CP014890 NZ_CP047495:2756330-2757667 [Pectobacterium brasiliense] [TssK]
ATGTCGAGTCGCAATCGCATTATCTGGCGGGAAGGTTTGTTCATTAAACCGCAGCATTTTCAACAACAGCAAAGACACAC
CGATTACGCACTGCATGCGCGTCTCAGCGCTCTCAGTGATTATTTCTATGGCTTGCAGTCTCTGGCGATTAATGAGGAAT
ACCTCAATTTTGGCCGCATCGCGCTGGTTAACGCCAGCGGGGTGATGCCTGACGGCACCGTGTTCAATATTCCGGGTGAT
GATGCGCTACCACTGCCGTTGGAGATTACCGACGTCGCGCTGGCAAACCAGAAAGTGTATCTGGCGCTGCCGCTGGCGGT
GAATGGCGTCAGCGAAGTCGGTCAGCCGGGGCAGGGGATCGCCAGCCGCCTGCAATCGCACCGGCATGACGTGCGCGATC
TGCACAGCGACGGCGGCGATATCGTTTCTCTGGAAGTCGGTAAGGTTAGCCTGCGCCTGATGCTCGATCGTGACGATCGC
AGCGCCTATGCCTCGCTGGCGATTGCCAACATTCTGGATAAACGCCCTGACGGCGGCTTGATTCTGGATCCGAATTTTAT
GCCGTGCAGCATCAGCGTCACCGCGATCCCCACCTTAAAACGCTTTTTGGGGGAATCCGCAGGCCTAGTCGCGGAACGCG
CGCGCAGTCTGGCACAGCGTATTGCCGCACCGGGACAGCAGGGCGTCGCGGACGTGGCTGAATTTATGATGCTGCAATTG
CTTAACCGCGCGCAGCCCAAACTGTCGCATTTGGCGCGCCTTGGCACGCTGCACCCTGAACGCCTGCACGAAACGCTGGT
TGAGCTGTGTGGCGAACTGATGACGTTTACCGACGAGTCGCGTCTGCCGCCAGAATTCCCCGCCTATCGTCACGAACACC
AGCAGGCCAGCTTTGAGCCGCTGATGATGGCGCTGCGTCAGGCGCTGAGCACCGTGCTGTCGCCGCGCGCCGTCTCCATC
CAACTGAAGAAACAGCCGTATGGCGTGATGGTGGCGATGGTTGGCGATGCGGAATTGATGGCCAGCGCCGAGTTTGTCCT
GGCGGTGCGTGCGCGTATGCCGCAGGAGCATCTGCGTAAACAGCTGCTGCAACAAACGAAGATCGCCTCCAGCGAGAAGA
TCCGCGAACTGATCAGCCTGCAATTGCCGGGTATTCCGCTGCTGCCGCTGCCGGTTGCGCCGCGTCAGCTGCCTTATCAC
GCGGGCTACAGCTATTTCCAACTGGATAGACAAAGCCCCGCCTGGCAGGTGCTGGTGTCTGGCAACACGCTGGCGTTCCA
TATTGCTGGCGAATTCCCGGAACTGGATATGCAGCTTTGGGCTATCCGTGGGCAGTAG