Detailed information of component protein


Summary

Component ID T6CP014885
Component protein type TssC
T6SS ID (Type) T6SS01170 experimental (Type i1)
Strain Pectobacterium brasiliense 1692
Replicon chromosome
Sequence Protein sequence (493 a.a.); Nucleotide sequence (1479 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) GT391_RS12280
Coordinate (Strand) 2749937..2751415 (+)
NCBI ID WP_010282534.1
RefSeq NZ_CP047495
Uniprot ID A0A6I6X4G7_9GAMM
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.3e-122 66..365
VipB_2 PF18945.2 1.9e-45 378..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-492 MSIVEEQVQAGATSASGSLLDDIMAQARISPVDEGYSVAKQGIAALVANILDSGNAAEPVNKALVDSMIVELDKKLSKQIDVILHAKELQELESSWRSMKLLIDRTDFRENIKLLVLHATKEELLEDFEFAPEISQSGFYKHVYSSGYGQFGGQPIGGVIGDYALTQSSPDIKLMQYVSAVGAMAHAPFISSVAPTFFGVDRFTDLPSIKDLKSVFEGPAYTKWRSLRESEDGRYLGLTAPRFLARLPYDPVENPIKGFNYKEDISTDHEHYLWGNTAYLMGTALTDSFAKYRWCPNIIGPQSGGAITDLPVHVYEAMGQLQAKIPTEVLITDRREYEMAEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERQDLERELNTWIKQYIADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVTMSVRPHFKYMGANFELSLVGRLDKE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9808 - -


  Protein sequence: 493 a.a.    

>T6CP014885 NZ_CP047495:2749937-2751415 [Pectobacterium brasiliense] [TssC]
MSIVEEQVQAGATSASGSLLDDIMAQARISPVDEGYSVAKQGIAALVANILDSGNAAEPVNKALVDSMIVELDKKLSKQI
DVILHAKELQELESSWRSMKLLIDRTDFRENIKLLVLHATKEELLEDFEFAPEISQSGFYKHVYSSGYGQFGGQPIGGVI
GDYALTQSSPDIKLMQYVSAVGAMAHAPFISSVAPTFFGVDRFTDLPSIKDLKSVFEGPAYTKWRSLRESEDGRYLGLTA
PRFLARLPYDPVENPIKGFNYKEDISTDHEHYLWGNTAYLMGTALTDSFAKYRWCPNIIGPQSGGAITDLPVHVYEAMGQ
LQAKIPTEVLITDRREYEMAEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERQDLERELNTWIKQYIADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVTMSVRPHFKYMGAN
FELSLVGRLDKE*

  Nucleotide sequence: 1479 bp    

>T6CP014885 NZ_CP047495:2749937-2751415 [Pectobacterium brasiliense] [TssC]
ATGTCAATAGTTGAAGAACAGGTTCAGGCAGGAGCCACCAGTGCTTCTGGATCGCTGCTTGATGACATCATGGCTCAAGC
GCGTATCAGCCCGGTTGATGAAGGCTACAGCGTCGCTAAACAGGGCATTGCCGCGCTGGTCGCTAACATTCTTGATAGCG
GTAATGCAGCAGAACCCGTGAACAAAGCGCTGGTCGATAGCATGATCGTCGAACTGGATAAAAAACTTAGCAAGCAGATT
GACGTTATTCTGCATGCGAAAGAATTACAGGAACTGGAATCTTCCTGGCGTTCGATGAAACTGCTTATCGATCGCACCGA
TTTCCGCGAAAACATCAAACTGTTGGTGTTACATGCGACAAAAGAAGAGCTGTTGGAAGATTTCGAATTCGCCCCTGAAA
TCTCACAGTCTGGCTTCTATAAGCACGTGTATTCCAGCGGCTACGGCCAGTTTGGTGGTCAGCCTATCGGCGGCGTAATC
GGTGACTATGCGCTGACGCAAAGTTCACCGGATATCAAGCTGATGCAGTATGTCAGCGCCGTGGGTGCGATGGCGCATGC
GCCGTTCATCTCTTCCGTTGCGCCGACCTTCTTTGGCGTGGATCGCTTCACCGATCTGCCTTCCATCAAAGATCTGAAAT
CCGTTTTCGAAGGCCCGGCCTACACGAAATGGCGTTCGCTGCGTGAGTCCGAAGATGGTCGCTATCTGGGGCTGACGGCA
CCGCGCTTCCTGGCTCGCTTGCCTTATGACCCGGTAGAGAACCCGATTAAGGGCTTCAACTACAAGGAAGATATCAGCAC
CGATCACGAACACTATCTGTGGGGCAACACCGCCTATCTGATGGGAACGGCGTTGACGGACAGCTTCGCGAAATACCGCT
GGTGTCCGAACATCATTGGCCCGCAGAGCGGCGGTGCGATTACCGACCTGCCAGTGCATGTTTATGAAGCCATGGGGCAA
CTTCAGGCCAAGATCCCGACTGAAGTCCTGATCACCGATCGTCGCGAATATGAAATGGCCGAAGAGGGCTTTATCACGCT
GACGATGCGTAAAGACAGTGACAACGCGGCGTTCTTCTCGGCTAACTCGGTGCAGAAGCCGAAGGTGTTCCCGAACACTA
AAGAAGGCAAAGAGGCGGAAACCAACTACAAGCTGGGTACGCAGCTGCCGTACATGTTCATCATCAACCGTCTGGCGCAC
TACATCAAAGTGCTACAGCGTGAACAGATTGGCTCATGGAAAGAGCGTCAGGATCTGGAGCGTGAGCTGAATACCTGGAT
TAAACAGTACATCGCCGATCAGGAAAACCCGCCGGCAGATGTTCGTAGCCGTCGTCCTCTGCGTGCCGCACAAATCAAAG
TGCTGGATGTAGAAGGAGAACCAGGTTGGTATCAGGTCACCATGTCTGTGCGCCCGCACTTCAAGTACATGGGGGCGAAC
TTTGAGCTGTCGCTGGTAGGGCGTTTGGATAAGGAATAA