Detailed information of component protein


Summary

Component ID T6CP014884
Component protein type TssB
T6SS ID (Type) T6SS01170 experimental (Type i1)
Strain Pectobacterium brasiliense 1692
Replicon chromosome
Sequence Protein sequence (168 a.a.); Nucleotide sequence (504 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) GT391_RS12275
Coordinate (Strand) 2749401..2749904 (+)
NCBI ID WP_010282535.1
RefSeq NZ_CP047495
Uniprot ID A0A1V2QZV7_9GAMM, A0A086EV57_9GAMM, A0A249Q8S6_9GAMM, A0A426IJD6_9GAMM, A0A221T6B9_9GAMM, A0A1M5U140_PECCA, A0A094TDZ7_9GAMM
KEGG ID pbra:B5S52_05465, pcv:BCS7_16400
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 2.6e-54 9..160

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-167 MAKGTDGASVAPKERINIKYVPATGGQQAEIELPLTLMIVGNMKGRTEETPIEERQTVSIDKNNFTSVMKEANLELNFSVPNRLEEESQDDLPVKLSIGGLNDFSPDRIAQQVPELRKLLDLREALVALKGPLGNIPSFRNRLQDLLSSEEAREQLLKELDLVKPAE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9885 - -



  Protein sequence: 168 a.a.    

>T6CP014884 NZ_CP047495:2749401-2749904 [Pectobacterium brasiliense] [TssB]
MAKGTDGASVAPKERINIKYVPATGGQQAEIELPLTLMIVGNMKGRTEETPIEERQTVSIDKNNFTSVMKEANLELNFSV
PNRLEEESQDDLPVKLSIGGLNDFSPDRIAQQVPELRKLLDLREALVALKGPLGNIPSFRNRLQDLLSSEEAREQLLKEL
DLVKPAE*

  Nucleotide sequence: 504 bp    

>T6CP014884 NZ_CP047495:2749401-2749904 [Pectobacterium brasiliense] [TssB]
ATGGCAAAAGGAACTGATGGTGCATCTGTCGCACCAAAGGAACGTATTAATATCAAATATGTTCCGGCCACTGGTGGTCA
GCAGGCGGAAATAGAATTGCCGTTGACGCTGATGATCGTGGGAAATATGAAAGGGCGCACAGAGGAAACGCCGATCGAAG
AACGTCAGACCGTATCGATCGATAAGAACAACTTTACCTCAGTGATGAAAGAAGCAAATCTGGAATTGAACTTCAGTGTG
CCAAACCGCCTTGAAGAAGAAAGTCAGGATGACCTGCCAGTGAAACTGAGCATCGGCGGTCTGAATGATTTCTCCCCTGA
CCGCATTGCCCAGCAAGTGCCTGAATTACGTAAGCTGCTTGATTTACGTGAAGCACTGGTGGCGCTGAAAGGCCCCCTCG
GCAATATTCCCTCATTCCGTAATCGTTTGCAGGATCTGTTGTCCAGCGAAGAAGCCAGAGAGCAGCTTCTGAAAGAGCTC
GATCTGGTCAAACCCGCCGAATAA