Detailed information of component protein


Summary

Component ID T6CP014868
Component protein type TssG
T6SS ID (Type) T6SS01168 experimental (Type i1)
Strain Vibrio cholerae C6706
Replicon chromosome
Sequence Protein sequence (339 a.a.); Nucleotide sequence (1017 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) GPY04_RS15980
Coordinate (Strand) 310454..311470 (-)
NCBI ID WP_000510181.1
RefSeq NZ_CP046845
Uniprot ID Q9KN54_VIBCH, A0A0X1L1N4_VIBCO, A0A0K9UV39_VIBCL, A0A7U8WQX6_VIBCL, A0A0H3Q390_VIBCL, C3LUD5_VIBCM, A0A0H5T3X6_VIBCL
KEGG ID vch:VCA0111, vcm:VCM66_A0109, vcq:EN18_04280
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.1e-88 28..324
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-338 MGHTERNAAVDLNSDPAQASPLSLPGNVREYNFYQLVELLQKLADINPESEEWERDCRLVFSANPSLGFSPSDVMALEARDDERWVMLTNFFGLSGAQSPLPGFILEQLVTEEPGGYKQPFLDFFNNRLINLVYRVWRKYRYYVRFQPGAQDVFSAQLFALVGLGDPDLRGETPINWCKMLAYAGTLAGRSRSPQVVAGIIAHCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMDTVIGESVIDCSGKFIICIKRLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELAMDEREAPLFCLDTRQNIALGWTSFLGQDAANKHVLIQVRQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9792 - -


  Protein sequence: 339 a.a.    

>T6CP014868 NZ_CP046845:c311470-310454 [Vibrio cholerae C6706] [TssG]
MGHTERNAAVDLNSDPAQASPLSLPGNVREYNFYQLVELLQKLADINPESEEWERDCRLVFSANPSLGFSPSDVMALEAR
DDERWVMLTNFFGLSGAQSPLPGFILEQLVTEEPGGYKQPFLDFFNNRLINLVYRVWRKYRYYVRFQPGAQDVFSAQLFA
LVGLGDPDLRGETPINWCKMLAYAGTLAGRSRSPQVVAGIIAHCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMD
TVIGESVIDCSGKFIICIKRLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELAMDEREAPLFCLDTRQNIALGWT
SFLGQDAANKHVLIQVRQ*

  Nucleotide sequence: 1017 bp    

>T6CP014868 NZ_CP046845:c311470-310454 [Vibrio cholerae C6706] [TssG]
ATGGGGCACACAGAGCGGAATGCAGCCGTTGATCTGAATTCAGATCCAGCGCAAGCCTCTCCGTTGAGCTTGCCGGGCAA
TGTACGGGAATACAACTTCTACCAACTGGTTGAGCTGTTGCAAAAACTGGCTGATATCAATCCCGAATCGGAAGAGTGGG
AGCGCGATTGCCGCTTGGTGTTCAGTGCTAACCCGAGCCTTGGATTTTCGCCCAGTGATGTGATGGCGCTTGAAGCGCGT
GACGATGAGCGTTGGGTTATGTTGACCAACTTTTTTGGCCTTTCCGGTGCACAGTCACCTCTGCCGGGGTTCATCCTTGA
GCAATTGGTGACGGAAGAGCCTGGGGGATATAAGCAGCCGTTTCTCGATTTTTTCAATAACCGATTGATTAATTTGGTTT
ATCGCGTTTGGCGTAAATACCGTTACTACGTACGTTTTCAGCCCGGTGCGCAGGATGTGTTCTCTGCACAGCTGTTTGCG
CTGGTGGGGTTGGGCGATCCTGACCTTCGCGGTGAAACGCCGATCAACTGGTGCAAAATGCTGGCTTACGCGGGCACGCT
GGCCGGACGTAGCCGTTCGCCACAAGTTGTGGCCGGCATTATTGCTCACTGTTTTGATTTACCGGATGTCTCCATTCGCC
AGTGGGTCAGACGTCGGGTATCGATTGATCGGAGTCAGCAACTGGCGCTGGGCAAGCAGAATGCGCGGTTGGGGATGGAC
ACGGTGATTGGCGAGTCCGTTATTGATTGCAGTGGAAAATTTATTATCTGTATCAAACGGTTATCTCGCAGTCGTTTTGC
TGATTTTTTGCCCTCCGGTAAAGAGTATCAGCCACTTTGCAAGCTGGTGGAGTTTATTTTGCGCGAACAGATGGCGTATG
ACCTCGAGCTGGCGATGGATGAACGAGAAGCGCCGCTGTTTTGTCTGGATACTAGACAGAATATCGCCCTCGGCTGGACT
TCGTTTCTTGGCCAAGATGCAGCCAATAAACATGTGTTAATTCAAGTAAGGCAATAA