Detailed information of component protein


Summary

Component ID T6CP014866
Component protein type TssK
T6SS ID (Type) T6SS01168 experimental (Type i1)
Strain Vibrio cholerae C6706
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) GPY04_RS15965
Coordinate (Strand) 307144..308478 (-)
NCBI ID WP_000458007.1
RefSeq NZ_CP046845
Uniprot ID A0A366ABE8_9VIBR, A0A366AWF7_9VIBR, Q9KN51_VIBCH, A0A0X1L1V1_VIBCO, D7HAU6_VIBCL, A0A0K9UXP9_VIBCL, A0A7U8WSA4_VIBCL, A0A0H3Q276_VIBCL, C3LUD8_VIBCM, A0A023PT89_VIBCL
KEGG ID vcx:VAA049_1794, vcz:VAB027_915, vch:VCA0114, vcq:EN18_04295, vcm:VCM66_A0112
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 6.1e-156 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-444 MFARNRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRIAIERAVGVMPDGTTFRIPQEDHLPDALEVTDASLANQIVYLAVPLRSESLMEINWPEERGTGRYVSRRLEVRDVHSVQGDTTTIDVSPVRLQLMLEREDRSAYASIAIGRILEKRPDGSVVLDPDFIPCHLNVVGISALHRFINEMSGLMRERAKNIAQRISSPAQGGVADVSDFMLLQALNRLQPQMKHLAELRSLHPERLFECLSCVCGELATFTDESRLPPSLPSYNHDSPSHSFQPLIRSLRQSLSVVLEPRAVSIQLDKRKYGLMVAPIHDPQLMESAEFIIAVKARMPLDELRRLFTQQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYHAGYTYYQLDKTSAAWAMLTHSSGFAFHVAAAFDDLELQFWAIRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9947 - -


  Protein sequence: 445 a.a.    

>T6CP014866 NZ_CP046845:c308478-307144 [Vibrio cholerae C6706] [TssK]
MFARNRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRIAIERAVGVMPDGTTFRIPQE
DHLPDALEVTDASLANQIVYLAVPLRSESLMEINWPEERGTGRYVSRRLEVRDVHSVQGDTTTIDVSPVRLQLMLEREDR
SAYASIAIGRILEKRPDGSVVLDPDFIPCHLNVVGISALHRFINEMSGLMRERAKNIAQRISSPAQGGVADVSDFMLLQA
LNRLQPQMKHLAELRSLHPERLFECLSCVCGELATFTDESRLPPSLPSYNHDSPSHSFQPLIRSLRQSLSVVLEPRAVSI
QLDKRKYGLMVAPIHDPQLMESAEFIIAVKARMPLDELRRLFTQQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYH
AGYTYYQLDKTSAAWAMLTHSSGFAFHVAAAFDDLELQFWAIRS*

  Nucleotide sequence: 1335 bp    

>T6CP014866 NZ_CP046845:c308478-307144 [Vibrio cholerae C6706] [TssK]
ATGTTTGCGCGTAACCGAGTGATCTGGAATGAAGGGCTATTTATTAAGCCGCAACATTTCCAGCAACAGCAGAGATATAC
GGAGTACTGCCTAGACGAGCGCCTGAGCACCGTGAGCCGTTACTTGTATGGGATTTCCGAGTTGTCGCTCAACCCGGAAT
ACCTCTCGTTTGGCCGTATTGCGATTGAGCGTGCGGTCGGCGTGATGCCCGATGGCACCACCTTTCGTATTCCTCAAGAA
GATCATCTTCCCGATGCGCTCGAAGTGACCGATGCGTCATTGGCAAACCAGATTGTCTACTTAGCCGTACCGCTACGTAG
TGAGTCGCTGATGGAGATTAACTGGCCAGAAGAGCGTGGTACGGGGCGCTATGTCAGCCGTCGTCTCGAAGTGCGTGATG
TCCATAGCGTGCAGGGTGATACCACGACGATTGATGTTTCCCCTGTGCGTTTGCAACTCATGCTTGAGCGAGAGGATCGC
AGTGCGTATGCCTCAATTGCTATTGGCCGTATTTTAGAAAAACGTCCTGATGGCAGCGTGGTGCTCGATCCGGATTTCAT
CCCTTGTCACTTGAATGTAGTGGGCATCTCTGCGCTGCACCGCTTTATTAATGAGATGTCAGGCCTGATGCGTGAGCGAG
CGAAAAATATTGCTCAGCGCATCAGCTCTCCAGCACAAGGTGGGGTTGCTGATGTTTCGGACTTTATGCTGCTGCAAGCT
TTAAACCGTCTGCAACCACAAATGAAGCATTTGGCAGAGCTGCGCAGCTTACACCCAGAGCGTCTGTTTGAATGTCTCTC
GTGTGTGTGTGGTGAGCTGGCTACCTTTACTGACGAAAGTCGTCTGCCGCCCAGTTTGCCAAGCTATAACCATGATTCAC
CCAGCCACTCTTTCCAGCCGCTGATCCGCAGCTTGCGTCAGAGCTTGAGCGTGGTGCTAGAGCCGCGTGCCGTCTCTATC
CAACTGGATAAACGTAAGTACGGTTTGATGGTTGCGCCAATCCATGATCCGCAACTGATGGAGAGTGCAGAGTTTATCAT
CGCGGTTAAAGCTCGCATGCCGTTGGATGAGCTACGCCGTCTGTTTACTCAGCAAACCAAAGTGGCATCGGTTGAGAAAA
TTCGTGAACTCATCTCACTGCAACTGCCGGGTATTCCATTGACGCCATTACCCGTCGCACCGCGCCAATTGCCTTACCAC
GCTGGCTACACCTACTACCAACTGGATAAAACCAGCGCTGCATGGGCGATGTTGACTCATTCCAGCGGTTTTGCGTTCCA
CGTTGCTGCAGCTTTTGACGATCTTGAGCTGCAATTCTGGGCTATCAGGAGCTAA