Detailed information of component protein
Summary
| Component ID | T6CP014866 |
| Component protein type | TssK |
| T6SS ID (Type) | T6SS01168  (Type i1) |
| Strain | Vibrio cholerae C6706 |
| Replicon | chromosome |
| Sequence | Protein sequence (445 a.a.); Nucleotide sequence (1335 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 307144..308478 (-) |
| NCBI ID | WP_000458007.1 |
| RefSeq | NZ_CP046845 |
| Uniprot ID | A0A366ABE8_9VIBR, A0A366AWF7_9VIBR, Q9KN51_VIBCH, A0A0X1L1V1_VIBCO, D7HAU6_VIBCL, A0A0K9UXP9_VIBCL, A0A7U8WSA4_VIBCL, A0A0H3Q276_VIBCL, C3LUD8_VIBCM, A0A023PT89_VIBCL |
| KEGG ID | vcx:VAA049_1794, vcz:VAB027_915, vch:VCA0114, vcq:EN18_04295, vcm:VCM66_A0112 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-444 | MFARNRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRIAIERAVGVMPDGTTFRIPQEDHLPDALEVTDASLANQIVYLAVPLRSESLMEINWPEERGTGRYVSRRLEVRDVHSVQGDTTTIDVSPVRLQLMLEREDRSAYASIAIGRILEKRPDGSVVLDPDFIPCHLNVVGISALHRFINEMSGLMRERAKNIAQRISSPAQGGVADVSDFMLLQALNRLQPQMKHLAELRSLHPERLFECLSCVCGELATFTDESRLPPSLPSYNHDSPSHSFQPLIRSLRQSLSVVLEPRAVSIQLDKRKYGLMVAPIHDPQLMESAEFIIAVKARMPLDELRRLFTQQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYHAGYTYYQLDKTSAAWAMLTHSSGFAFHVAAAFDDLELQFWAIRS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9947 | - | - |
Protein sequence: 445 a.a.
Nucleotide sequence: 1335 bp