Detailed information of component protein


Summary

Component ID T6CP014824
Component protein type TssG
T6SS ID (Type) T6SS01164 experimental (Type i4b)
Strain Acinetobacter baumannii AbCAN2
Replicon chromosome
Sequence Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) F9K57_RS05845
Coordinate (Strand) 1217897..1218895 (+)
NCBI ID WP_159141859.1
RefSeq NZ_CP045428
Uniprot ID UPI001315EB01
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 3.1e-65 20..311
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-332 MQSERWWQDSSITAELFQRPKSFEFIQATRLLRHMPAIDAALSWSDYFKFETSFNLNFPATEIESLELVDERVHLTNLIVGLTGIQGALPYTYTNKIKQAPRQQRAETKEFLSLFNHKLTSQYVESSITYHLPVRYEIENKNDYLDILHALNGYVRSQHQQQDLDEYFAEFSGLMQGQNNTVHALKTMLSCIFKHEITIKEFVQESFKLAGDQLTTLGGSQPSLLGINTFCGETIQQIDGKIEIQIGPLKRQQYLKFLPHQELSLKLKKIVETWCSPTLSIDLRLILDETEIQPVRLTQGQESGLGQGAFLMSRKPNTHNDETCYSLIGEQI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9942 - -


  Protein sequence: 333 a.a.    

>T6CP014824 NZ_CP045428:1217897-1218895 [Acinetobacter baumannii] [TssG]
MQSERWWQDSSITAELFQRPKSFEFIQATRLLRHMPAIDAALSWSDYFKFETSFNLNFPATEIESLELVDERVHLTNLIV
GLTGIQGALPYTYTNKIKQAPRQQRAETKEFLSLFNHKLTSQYVESSITYHLPVRYEIENKNDYLDILHALNGYVRSQHQ
QQDLDEYFAEFSGLMQGQNNTVHALKTMLSCIFKHEITIKEFVQESFKLAGDQLTTLGGSQPSLLGINTFCGETIQQIDG
KIEIQIGPLKRQQYLKFLPHQELSLKLKKIVETWCSPTLSIDLRLILDETEIQPVRLTQGQESGLGQGAFLMSRKPNTHN
DETCYSLIGEQI*

  Nucleotide sequence: 999 bp    

>T6CP014824 NZ_CP045428:1217897-1218895 [Acinetobacter baumannii] [TssG]
ATGCAGTCAGAACGTTGGTGGCAAGACTCTTCTATAACGGCTGAGTTGTTTCAACGCCCTAAGTCTTTTGAGTTTATTCA
AGCAACACGTTTATTGCGTCATATGCCTGCCATTGACGCAGCTTTGTCATGGTCTGACTATTTTAAATTTGAGACCTCAT
TTAACTTAAACTTTCCAGCCACTGAAATTGAAAGTTTAGAGTTAGTAGATGAGCGTGTTCATTTAACAAACCTGATCGTT
GGTCTTACCGGTATACAAGGTGCATTACCTTATACATATACAAATAAAATTAAGCAGGCTCCAAGGCAACAACGCGCTGA
AACGAAAGAGTTTTTAAGCTTATTTAATCATAAGTTGACCAGTCAGTATGTAGAGTCAAGTATTACTTATCACTTGCCTG
TGCGCTATGAAATTGAAAATAAAAATGATTATTTGGATATTCTTCATGCATTGAATGGCTATGTTCGCTCACAACATCAG
CAACAAGACTTGGATGAATATTTCGCTGAATTTTCAGGCTTAATGCAGGGGCAAAATAATACGGTTCATGCTTTAAAGAC
GATGTTGAGTTGTATTTTTAAGCATGAAATTACAATTAAAGAGTTTGTACAGGAATCGTTTAAGTTAGCGGGTGATCAGC
TAACCACTTTAGGTGGAAGTCAACCGAGCTTACTTGGTATTAACACATTTTGTGGGGAAACGATTCAACAAATTGATGGA
AAAATTGAGATTCAAATAGGTCCGCTTAAGCGTCAGCAATATTTAAAATTTTTACCTCATCAAGAGCTTAGCTTAAAGCT
CAAAAAAATCGTAGAAACCTGGTGCAGTCCAACTTTATCGATAGATTTAAGATTGATATTGGATGAGACTGAAATACAAC
CTGTTCGCTTAACTCAAGGCCAAGAAAGTGGCCTAGGGCAAGGCGCTTTTTTAATGTCTCGTAAGCCTAATACACATAAC
GATGAAACATGTTATAGCCTTATAGGAGAGCAAATATGA