Detailed information of component protein


Summary

Component ID T6CP014820
Component protein type TssC
T6SS ID (Type) T6SS01164 experimental (Type i4b)
Strain Acinetobacter baumannii AbCAN2
Replicon chromosome
Sequence Protein sequence (494 a.a.); Nucleotide sequence (1482 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) F9K57_RS05825
Coordinate (Strand) 1213515..1214996 (+)
NCBI ID WP_001066523.1
RefSeq NZ_CP045428
Uniprot ID A0A7U4BM90_ACIBA, A0A0J0ZXP1_ACIBA, A0A427R4M7_9GAMM, A0A427XA76_9GAMM, A0A7U4DCX0_ACIBC, V5VEF2_ACIBA, A0A7U4DG00_ACIB5, A0A654KYL1_ACIBM, A0A5K6CSG4_ACIB3, A0A385EV12_ACIBA
KEGG ID abw:BL01_13270, abz:ABZJ_01455, abk:LX00_06410, abau:IX87_03970
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 4.6e-137 66..368
VipB_2 PF18945.2 6e-45 378..488
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-493 MNNTQSAAMPLVENEEVNLLDSIVEQSRIARNEEEHSRAKSLIGELAKEVMAGTITVSENMTLSIDKRIAEIDALISKQLSQIMHNEQFQKIESTWRGLYYFCQETPSNPLIKIRMLNTTKKELVKDFQGATDFDQSTLFKKIYEEEYGSFGGAPYSALIGDFEFDRTPSDMYLLEQISHVAAAAHAPFISAASPSILGLESFTDIDRPRDVSKIFETAEYVQWRSFRDSEDSRYVALTLPHVLGRLPYHPKEGTATEGFNFIEDVSGENHNEYLWMNAAYAFGTRLTNAFDMHGWCAAIRGVEGGGLVEGLPVHTFKTQDGEVVFKCPTEIAITDRREKELSDLGFIPLVHCKNTDYAAFFGAQSTQKPKKYDNDTANANSALSSQIQYIMAVSRIAHYLKAMMRDKVGSFASAGNVEAFLNEWLSQYVLLDDGASQEAKAQYPLREASVKVVEDPAQPGHYKSVVFLRPHFQLDELSVSLRLVTELPQSSN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9838 - -


  Protein sequence: 494 a.a.    

>T6CP014820 NZ_CP045428:1213515-1214996 [Acinetobacter baumannii] [TssC]
MNNTQSAAMPLVENEEVNLLDSIVEQSRIARNEEEHSRAKSLIGELAKEVMAGTITVSENMTLSIDKRIAEIDALISKQL
SQIMHNEQFQKIESTWRGLYYFCQETPSNPLIKIRMLNTTKKELVKDFQGATDFDQSTLFKKIYEEEYGSFGGAPYSALI
GDFEFDRTPSDMYLLEQISHVAAAAHAPFISAASPSILGLESFTDIDRPRDVSKIFETAEYVQWRSFRDSEDSRYVALTL
PHVLGRLPYHPKEGTATEGFNFIEDVSGENHNEYLWMNAAYAFGTRLTNAFDMHGWCAAIRGVEGGGLVEGLPVHTFKTQ
DGEVVFKCPTEIAITDRREKELSDLGFIPLVHCKNTDYAAFFGAQSTQKPKKYDNDTANANSALSSQIQYIMAVSRIAHY
LKAMMRDKVGSFASAGNVEAFLNEWLSQYVLLDDGASQEAKAQYPLREASVKVVEDPAQPGHYKSVVFLRPHFQLDELSV
SLRLVTELPQSSN*

  Nucleotide sequence: 1482 bp    

>T6CP014820 NZ_CP045428:1213515-1214996 [Acinetobacter baumannii] [TssC]
ATGAATAATACTCAATCAGCAGCAATGCCACTTGTTGAAAATGAAGAAGTTAATCTTTTAGATTCGATTGTTGAACAAAG
CCGTATTGCACGAAATGAAGAAGAACATTCTCGTGCTAAAAGCTTAATTGGTGAGCTTGCTAAAGAAGTAATGGCAGGAA
CCATTACTGTTTCTGAAAATATGACTTTATCAATTGATAAGCGTATTGCAGAAATTGATGCTCTGATTTCAAAGCAGTTA
AGTCAGATCATGCACAATGAACAATTCCAAAAAATTGAGTCAACTTGGCGTGGTCTTTATTACTTTTGTCAGGAAACGCC
TTCAAATCCGCTCATTAAAATTCGTATGCTCAATACGACTAAGAAAGAGTTGGTAAAAGATTTCCAAGGTGCTACAGACT
TTGATCAAAGCACTTTGTTTAAGAAAATCTACGAAGAAGAATACGGTTCTTTTGGTGGTGCACCATACTCAGCATTAATT
GGTGATTTTGAGTTTGATCGTACTCCATCTGATATGTATTTGCTTGAGCAAATCTCTCATGTTGCAGCGGCAGCACATGC
ACCATTTATTTCAGCTGCTAGTCCGAGCATTTTAGGTCTTGAATCATTTACAGATATTGATCGTCCTAGAGATGTTTCAA
AAATCTTTGAAACCGCTGAATATGTTCAATGGCGTTCGTTCCGTGATAGTGAAGACTCCCGTTATGTTGCATTGACTTTG
CCTCATGTCTTGGGTCGTCTCCCATATCATCCAAAAGAAGGTACTGCGACAGAAGGCTTTAATTTTATTGAAGATGTTTC
TGGTGAAAACCACAATGAATATTTGTGGATGAATGCAGCTTATGCTTTTGGTACTCGCTTAACAAATGCATTTGATATGC
ATGGTTGGTGTGCTGCTATTCGCGGTGTTGAAGGTGGTGGTTTAGTTGAAGGCTTGCCAGTACATACTTTTAAAACACAA
GATGGCGAAGTGGTATTCAAGTGTCCAACTGAAATTGCAATCACGGATCGCCGTGAAAAAGAGTTAAGCGATCTAGGCTT
CATTCCGTTAGTACATTGTAAAAATACAGATTACGCAGCTTTCTTTGGCGCGCAATCAACTCAAAAACCTAAAAAATATG
ACAATGATACAGCCAATGCAAACTCGGCTTTATCAAGTCAGATTCAGTACATCATGGCTGTTTCACGTATTGCACATTAC
TTAAAAGCAATGATGCGAGATAAAGTGGGTAGCTTTGCTTCTGCTGGAAATGTTGAAGCATTCTTAAATGAGTGGTTGTC
ACAGTATGTCCTACTTGACGATGGTGCTTCTCAAGAAGCAAAAGCTCAATACCCGTTACGTGAAGCATCTGTAAAAGTTG
TAGAAGATCCTGCTCAACCAGGTCACTACAAATCTGTGGTTTTCTTGCGACCACATTTCCAGCTGGATGAGTTGTCGGTT
TCTTTACGACTTGTCACTGAGTTACCTCAGTCCTCAAATTAA