Detailed information of component protein


Summary

Component ID T6CP014336
Component protein type TssM
T6SS ID (Type) T6SS01119 experimental (Type i4b)
Strain Acinetobacter baumannii strain UPAB1
Replicon chromosome
Sequence Protein sequence (1275 a.a.); Nucleotide sequence (3825 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) D1G37_RS14035
Coordinate (Strand) 2953044..2956868 (+)
NCBI ID WP_046882918.1
RefSeq NZ_CP032215
Uniprot ID UPI00062C95D2
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 3.8e-82 496..837
IcmF-related_N PF14331.8 6.9e-79 188..444
IcmF_C PF06744.14 3.8e-18 1107..1197
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-4 MHTI
Transmembrane helix 5-27 LGYLWQYITNPKAIIALSLFVAL
Outside 28-36 MSSYTSIPR
Transmembrane helix 37-59 HIFWALASAYALGLIAYGIYWLI
Inside 60-442 QRKKHAVQGEELAQAIEKDTQAEYGKNKDKEELQLISQQMKESIQLIRKSKLGDKKGNAALYELPWYMVIGNPAAGKSSAIYNSGLKFPFEETHQKMVSAGLSGTRNCDWFFSTEGILLDTAGRYSVYSEDHSEWLGFLNILKKNRSKAPVNGLILIVSIAELVSQSPEHSLKLAKNLRARIQDLTERLEVVVPVYLVFSKMDLIAGFTEFFEFYEAQEYNQAWGATLPYEQSSSHNAVDLFEKHYNILYDGLKGVSSTHLSRRHSQNISPSVMTFPLEFKTLKPALKSFIATLFEDNPYQFQPVFRGFYFTSALQEGVIESPMTEQIAQEFQLSQIAQSEVKDQLKTTPNHGYFLKGLFSDVILKDKDLVKQHVNTSKKRQR
Transmembrane helix 443-462 YIAFIGALAGVSIILGVWVW
Outside 463-1274 SYRNNQQLIAEVQADLNKVVQLEKSSGQQLSTQLEALLILQGRLQQLDEFDENRPLKFSFGLYQGNELREKLKAEYLKGVKQIVLIPTQQNIAQYLQRVKNNEATLKANHTNVEIKQTAQTQQYLEPSDTNPQDAYNALKAYLMMSNPQYMDASHLSDQVTRFWRSWLDANKGQMPRADMIQEAEQILSYAMTLANDKQFPILDADSQLVDQTRQVLLSVIRGMPARDRVYNEIKMRAAVRFPALTVSQIVGDANKNIVLGSYALPGVFTQKAWNEYVEKAIEEAADKPTDTKDWVLNSRQSDDLTFSGSPEQIRKQLTALYKQEYIAEWRKFLSGIHYAKATQFAQQVKNIDVLGEPQNSPIRMLIERVAIETNWDNPVVQAELAAPQKGFIAWFKRKVLNHDDKQLANQAVTNAQGPISQEYQMFYQLVRKRDDQQGKSLLDEYMTNLALVRSKFNELKNAGEIGPNAMTLVKQTLNEQTSVFNQTQKIVDEKMAVGFSEIDQQLLQKLVVSPLTQAFESLITPTQDEINKLWVMQAYQPFTANLAKKYPFNSSASLQATSSEIGQILGENGSISRFVKESLDPFVIRRGYTLTSKTWKDLGISLNPQFVMNFQRYVAPTNGMATGELNSQAPAAPATNQSNFQFYPIQNPQLLSYTVDIDGQRMTYENGVQQWVNFIWPNQGSIPGARITAVDLQGQTHTIFDEPGEYGINRLIDSAQRKEQNGGFEMLWRSKTDPSLFVKMNFRLISSNSGSIGSSRGYSGMQLVDKVTADKAARVVSAQQAPAQAAAPAKTENPVSALAQPAAGIKP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9546 - -


  Protein sequence: 1275 a.a.    

>T6CP014336 NZ_CP032215:2953044-2956868 [Acinetobacter baumannii] [TssM]
MHTILGYLWQYITNPKAIIALSLFVALMSSYTSIPRHIFWALASAYALGLIAYGIYWLIQRKKHAVQGEELAQAIEKDTQ
AEYGKNKDKEELQLISQQMKESIQLIRKSKLGDKKGNAALYELPWYMVIGNPAAGKSSAIYNSGLKFPFEETHQKMVSAG
LSGTRNCDWFFSTEGILLDTAGRYSVYSEDHSEWLGFLNILKKNRSKAPVNGLILIVSIAELVSQSPEHSLKLAKNLRAR
IQDLTERLEVVVPVYLVFSKMDLIAGFTEFFEFYEAQEYNQAWGATLPYEQSSSHNAVDLFEKHYNILYDGLKGVSSTHL
SRRHSQNISPSVMTFPLEFKTLKPALKSFIATLFEDNPYQFQPVFRGFYFTSALQEGVIESPMTEQIAQEFQLSQIAQSE
VKDQLKTTPNHGYFLKGLFSDVILKDKDLVKQHVNTSKKRQRYIAFIGALAGVSIILGVWVWSYRNNQQLIAEVQADLNK
VVQLEKSSGQQLSTQLEALLILQGRLQQLDEFDENRPLKFSFGLYQGNELREKLKAEYLKGVKQIVLIPTQQNIAQYLQR
VKNNEATLKANHTNVEIKQTAQTQQYLEPSDTNPQDAYNALKAYLMMSNPQYMDASHLSDQVTRFWRSWLDANKGQMPRA
DMIQEAEQILSYAMTLANDKQFPILDADSQLVDQTRQVLLSVIRGMPARDRVYNEIKMRAAVRFPALTVSQIVGDANKNI
VLGSYALPGVFTQKAWNEYVEKAIEEAADKPTDTKDWVLNSRQSDDLTFSGSPEQIRKQLTALYKQEYIAEWRKFLSGIH
YAKATQFAQQVKNIDVLGEPQNSPIRMLIERVAIETNWDNPVVQAELAAPQKGFIAWFKRKVLNHDDKQLANQAVTNAQG
PISQEYQMFYQLVRKRDDQQGKSLLDEYMTNLALVRSKFNELKNAGEIGPNAMTLVKQTLNEQTSVFNQTQKIVDEKMAV
GFSEIDQQLLQKLVVSPLTQAFESLITPTQDEINKLWVMQAYQPFTANLAKKYPFNSSASLQATSSEIGQILGENGSISR
FVKESLDPFVIRRGYTLTSKTWKDLGISLNPQFVMNFQRYVAPTNGMATGELNSQAPAAPATNQSNFQFYPIQNPQLLSY
TVDIDGQRMTYENGVQQWVNFIWPNQGSIPGARITAVDLQGQTHTIFDEPGEYGINRLIDSAQRKEQNGGFEMLWRSKTD
PSLFVKMNFRLISSNSGSIGSSRGYSGMQLVDKVTADKAARVVSAQQAPAQAAAPAKTENPVSALAQPAAGIKP*

  Nucleotide sequence: 3825 bp    

>T6CP014336 NZ_CP032215:2953044-2956868 [Acinetobacter baumannii] [TssM]
ATGCATACAATTTTAGGCTACTTGTGGCAGTACATCACGAATCCTAAAGCAATTATCGCCTTGTCATTGTTCGTGGCATT
GATGTCTTCCTATACTTCAATTCCTCGCCATATATTTTGGGCTTTAGCATCTGCATATGCTTTAGGGCTCATCGCTTATG
GAATTTATTGGCTAATTCAGCGTAAAAAGCATGCTGTCCAAGGTGAAGAACTTGCGCAAGCGATTGAAAAGGATACCCAA
GCAGAGTACGGCAAAAATAAAGATAAAGAAGAGCTACAACTTATTAGCCAACAAATGAAAGAATCTATTCAATTGATTCG
TAAGTCAAAGTTAGGCGATAAAAAGGGGAACGCAGCACTATATGAGTTGCCATGGTATATGGTCATTGGTAACCCGGCTG
CTGGTAAAAGTTCTGCGATCTATAATTCTGGTTTAAAGTTTCCTTTTGAAGAAACCCATCAAAAAATGGTTTCGGCTGGT
TTAAGCGGTACGCGTAATTGTGACTGGTTTTTTTCGACTGAGGGTATTTTACTCGACACCGCTGGACGTTATTCGGTCTA
TAGTGAAGATCACTCTGAATGGTTAGGCTTTTTAAATATCTTAAAGAAGAACCGTTCGAAGGCACCAGTAAATGGTTTAA
TTCTTATTGTTAGTATTGCTGAGCTTGTTAGTCAGAGTCCTGAACACTCATTAAAACTTGCGAAAAATTTACGCGCTCGT
ATTCAGGATTTAACCGAACGTTTAGAAGTAGTTGTACCCGTATATCTAGTCTTTTCAAAAATGGATTTGATCGCGGGTTT
TACCGAATTTTTCGAATTCTATGAAGCGCAAGAATATAATCAGGCGTGGGGCGCAACACTACCATATGAGCAAAGCTCTT
CTCATAATGCCGTAGATCTTTTTGAGAAACACTACAATATTCTTTATGACGGTTTAAAAGGGGTCAGTTCAACTCATCTT
AGCCGTCGACATTCTCAAAATATCTCACCTAGTGTGATGACTTTCCCATTAGAATTTAAGACATTAAAACCAGCATTAAA
AAGTTTTATTGCGACACTGTTTGAAGATAACCCTTACCAGTTCCAACCAGTTTTCCGCGGGTTTTATTTCACAAGTGCTT
TGCAAGAAGGCGTAATAGAAAGTCCAATGACTGAGCAAATTGCACAGGAATTCCAGCTTTCCCAAATTGCTCAAAGTGAA
GTAAAAGATCAACTAAAAACAACGCCTAACCATGGTTATTTCTTAAAAGGCTTGTTTTCAGATGTCATTTTAAAAGATAA
AGATCTGGTTAAACAGCATGTCAATACAAGCAAAAAGCGTCAGCGTTATATTGCATTTATTGGTGCTTTAGCTGGCGTAT
CCATTATTCTAGGTGTGTGGGTTTGGTCATATCGTAACAATCAACAACTTATTGCTGAAGTTCAAGCTGATTTAAATAAA
GTTGTTCAATTGGAAAAGAGTTCAGGTCAACAATTGTCGACTCAATTAGAGGCCTTACTTATCTTGCAAGGACGTCTACA
ACAGTTAGACGAATTTGATGAAAATAGACCACTAAAATTTAGTTTTGGTTTATATCAAGGTAATGAGCTACGTGAAAAAT
TAAAAGCTGAATATTTAAAAGGTGTTAAGCAAATTGTTTTGATACCTACACAGCAAAATATTGCTCAGTATTTGCAACGT
GTAAAAAATAACGAAGCAACTTTAAAAGCAAATCATACCAATGTTGAGATCAAGCAAACTGCTCAAACTCAGCAATATTT
AGAGCCTTCGGATACCAACCCTCAAGATGCTTATAATGCTTTAAAAGCATATTTAATGATGAGCAATCCACAGTATATGG
ATGCAAGTCACTTAAGTGATCAGGTAACGCGTTTCTGGCGTTCTTGGCTTGATGCCAATAAAGGGCAGATGCCACGTGCA
GATATGATCCAAGAAGCTGAGCAGATCTTATCTTATGCAATGACATTGGCAAATGATAAACAATTCCCGATCTTGGATGC
TGACTCTCAACTCGTGGATCAGACACGTCAAGTATTGCTCTCTGTTATTAGAGGTATGCCAGCACGTGACCGTGTTTATA
ATGAAATTAAAATGCGTGCTGCTGTGCGCTTTCCAGCTTTAACTGTAAGCCAGATTGTAGGTGACGCAAATAAAAATATT
GTATTGGGTAGTTATGCATTACCAGGGGTATTTACTCAAAAAGCTTGGAACGAGTATGTAGAAAAAGCAATTGAGGAAGC
AGCAGACAAACCTACGGATACTAAAGACTGGGTGCTTAATAGCCGTCAATCTGATGATTTAACTTTCTCTGGTAGTCCAG
AGCAAATCAGAAAGCAGCTTACTGCATTGTATAAACAAGAATATATTGCAGAGTGGAGAAAATTCTTAAGTGGCATTCAC
TATGCAAAAGCAACTCAGTTTGCTCAGCAAGTTAAAAATATTGATGTATTGGGCGAACCACAAAATTCACCAATTCGCAT
GCTTATTGAACGCGTAGCCATTGAAACAAACTGGGATAATCCGGTTGTTCAAGCAGAGTTAGCAGCGCCTCAAAAAGGAT
TTATTGCATGGTTTAAACGTAAGGTTTTAAACCATGATGATAAACAATTAGCAAATCAGGCTGTAACGAATGCTCAAGGG
CCTATTTCTCAAGAATATCAAATGTTCTATCAATTGGTTCGTAAACGTGATGATCAGCAAGGTAAATCTTTGCTTGATGA
ATATATGACGAATCTTGCCTTAGTACGTAGTAAGTTTAATGAACTTAAGAATGCGGGTGAGATCGGACCGAATGCGATGA
CATTGGTTAAGCAAACTTTAAATGAGCAGACATCGGTATTTAACCAGACTCAAAAAATTGTAGATGAAAAGATGGCGGTT
GGTTTCAGTGAAATTGATCAGCAACTTCTACAAAAATTAGTGGTGAGTCCACTTACCCAAGCCTTTGAAAGTTTAATTAC
ACCTACTCAAGATGAAATTAATAAGCTATGGGTAATGCAAGCCTATCAACCATTTACTGCAAATCTTGCTAAGAAATATC
CATTTAACTCATCAGCTTCTTTACAAGCAACAAGTAGTGAAATTGGACAAATTCTTGGTGAGAACGGCAGTATTTCCCGT
TTTGTTAAAGAGAGTTTAGACCCGTTTGTTATCCGCCGCGGTTATACCTTAACCTCCAAAACATGGAAAGATTTGGGGAT
TAGTTTAAACCCACAATTTGTTATGAACTTCCAACGCTATGTTGCACCTACAAATGGAATGGCAACAGGTGAGTTAAATA
GCCAAGCACCAGCTGCTCCGGCAACCAATCAGTCTAACTTCCAGTTCTACCCAATTCAAAACCCGCAGTTACTTTCATAT
ACCGTTGATATTGATGGTCAGCGTATGACTTATGAAAATGGGGTGCAGCAATGGGTTAACTTTATTTGGCCAAATCAAGG
CAGTATTCCGGGTGCTCGTATTACGGCTGTAGATTTACAAGGTCAAACACATACCATTTTTGATGAACCAGGCGAATACG
GGATTAACCGTTTAATCGATAGTGCACAGCGTAAAGAGCAAAACGGTGGTTTTGAAATGCTTTGGCGCAGTAAGACAGAT
CCATCACTCTTTGTGAAAATGAACTTCCGTCTTATTAGTAGTAATTCAGGAAGTATCGGTTCAAGCCGTGGCTACTCTGG
TATGCAACTGGTTGACAAAGTAACTGCGGATAAGGCTGCTCGCGTTGTATCCGCACAGCAAGCACCAGCTCAGGCAGCTG
CTCCTGCCAAAACTGAAAATCCAGTTTCTGCACTAGCACAACCTGCTGCGGGAATTAAGCCATGA