Detailed information of component protein


Summary

Component ID T6CP014335
Component protein type TssG
T6SS ID (Type) T6SS01119 experimental (Type i4b)
Strain Acinetobacter baumannii strain UPAB1
Replicon chromosome
Sequence Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) D1G37_RS14025
Coordinate (Strand) 2950606..2951604 (+)
NCBI ID WP_001190397.1
RefSeq NZ_CP032215
Uniprot ID A0A427XAJ0_9GAMM, A0A0M3FNE1_ACIBA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.1e-65 20..311
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-332 MQSERWWQDSSVTAELFQRPKSFEFIQATRLLRHMPANDAALSWSDYFKFETSFNLNFPATEIESLELVDERVHLTNLIVGLTGIQGALPYTYTNKIKQAPRQQRAETKEFLSLFNHKLTSQYVESSITYHLPVRYEIENKNDYLDILHALNGYVRSQHQQQDLDEYFAEFSGLMQGQNNTVHALKTMLSCIFKHEITIKEFVQESFKLAGDQLTTLGGSQPSLLGINTFCGETIQQIDGKIEIQIGPLKRQQYLKFLPHQELSLKLKKIVETWCSPTLSIDLRLILDETEIQPVRLTQGQESGLGQGAFLMSRNPNTHNDETCYSLIGEQI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9941 - -


  Protein sequence: 333 a.a.    

>T6CP014335 NZ_CP032215:2950606-2951604 [Acinetobacter baumannii] [TssG]
MQSERWWQDSSVTAELFQRPKSFEFIQATRLLRHMPANDAALSWSDYFKFETSFNLNFPATEIESLELVDERVHLTNLIV
GLTGIQGALPYTYTNKIKQAPRQQRAETKEFLSLFNHKLTSQYVESSITYHLPVRYEIENKNDYLDILHALNGYVRSQHQ
QQDLDEYFAEFSGLMQGQNNTVHALKTMLSCIFKHEITIKEFVQESFKLAGDQLTTLGGSQPSLLGINTFCGETIQQIDG
KIEIQIGPLKRQQYLKFLPHQELSLKLKKIVETWCSPTLSIDLRLILDETEIQPVRLTQGQESGLGQGAFLMSRNPNTHN
DETCYSLIGEQI*

  Nucleotide sequence: 999 bp    

>T6CP014335 NZ_CP032215:2950606-2951604 [Acinetobacter baumannii] [TssG]
ATGCAGTCAGAACGTTGGTGGCAAGACTCTTCTGTAACGGCTGAGTTGTTTCAACGCCCTAAGTCTTTTGAGTTTATTCA
AGCAACACGTTTATTGCGTCATATGCCTGCCAATGACGCAGCTTTGTCATGGTCTGACTATTTTAAATTTGAGACCTCAT
TTAACTTAAATTTTCCAGCCACTGAAATTGAAAGTTTAGAGTTAGTAGATGAGCGTGTTCATTTAACAAACCTGATCGTT
GGTCTGACTGGTATACAAGGTGCATTACCTTATACATATACAAATAAAATTAAGCAGGCTCCAAGGCAACAACGCGCTGA
AACGAAAGAGTTTTTAAGCTTATTTAATCATAAGTTGACCAGTCAGTATGTTGAGTCAAGTATTACTTATCACTTGCCTG
TGCGCTATGAAATTGAAAATAAAAATGATTATTTGGATATTCTCCATGCATTGAATGGCTATGTTCGCTCACAACATCAG
CAACAAGACTTGGATGAATATTTCGCTGAATTTTCAGGCCTAATGCAGGGGCAAAATAATACGGTTCATGCTTTAAAGAC
GATGTTGAGTTGTATTTTTAAGCATGAAATTACAATTAAAGAGTTTGTACAGGAATCGTTTAAGTTAGCGGGTGATCAGC
TAACCACTTTAGGCGGAAGTCAACCGAGCTTACTTGGTATTAACACATTTTGTGGGGAAACGATTCAACAAATTGATGGA
AAAATTGAGATTCAAATAGGTCCGCTTAAGCGTCAGCAATATTTAAAATTTTTACCTCATCAAGAGCTTAGCTTAAAGCT
CAAAAAAATCGTAGAAACCTGGTGCAGTCCAACTTTATCGATAGATTTAAGATTGATATTGGATGAGACTGAAATACAAC
CTGTTCGCTTAACTCAAGGCCAAGAAAGTGGTTTAGGGCAAGGCGCTTTTTTAATGTCTCGTAATCCTAATACACATAAC
GATGAAACATGTTATAGCCTTATTGGAGAGCAAATATGA