Detailed information of component protein
Summary
| Component ID | T6CP014330 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01119  (Type i4b) |
| Strain | Acinetobacter baumannii strain UPAB1 |
| Replicon | chromosome |
| Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | D1G37_RS14000 |
| Coordinate (Strand) | 2945728..2946231 (+) |
| NCBI ID | WP_001119042.1 |
| RefSeq | NZ_CP032215 |
| Uniprot ID | A0A0R1C0C6_ACINO, A0A7U4F6E1_ACIBA, A0A0J1D543_ACIBA, A0A3R9GCK7_9GAMM, A0A7U3XZ96_ACIBC, R9RIN9_ACIBA, A0A7U3Y5I2_ACIB5, A0A654KXY3_ACIBM, B0VB05_ACIBY, A0A5K6CSB6_ACIB3, D0C8P5_ACIB2, L9MHM8_9GAMM, A0A385EU23_ACIBA |
| KEGG ID | abw:BL01_13275, abz:ABZJ_01454, aby:ABAYE2415 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 1e-59 | 12..164 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-167 | MAKRESVQKKLQRIRPPRVQLTYDVEIGDAKEAKELPFVVGVMGDFSAASELERTKLKDKKFINVDLDNIDEVMESLSPRAAFQVDNTLTEEGGKMAVDLTFKSMEDFRPENVVQQVDPLKKLVEARERLTDLRNKISNSERLEDLLDEVLKNTDQIRKLSAEADHE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9973 | - | - |
Protein sequence: 168 a.a.
>T6CP014330 NZ_CP032215:2945728-2946231 [Acinetobacter baumannii] [TssB]
MAKRESVQKKLQRIRPPRVQLTYDVEIGDAKEAKELPFVVGVMGDFSAASELERTKLKDKKFINVDLDNIDEVMESLSPR
AAFQVDNTLTEEGGKMAVDLTFKSMEDFRPENVVQQVDPLKKLVEARERLTDLRNKISNSERLEDLLDEVLKNTDQIRKL
SAEADHE*
MAKRESVQKKLQRIRPPRVQLTYDVEIGDAKEAKELPFVVGVMGDFSAASELERTKLKDKKFINVDLDNIDEVMESLSPR
AAFQVDNTLTEEGGKMAVDLTFKSMEDFRPENVVQQVDPLKKLVEARERLTDLRNKISNSERLEDLLDEVLKNTDQIRKL
SAEADHE*
Nucleotide sequence: 504 bp
>T6CP014330 NZ_CP032215:2945728-2946231 [Acinetobacter baumannii] [TssB]
ATGGCTAAGAGAGAAAGCGTACAAAAGAAGCTTCAGCGAATTCGACCTCCACGTGTTCAGCTTACATATGATGTCGAAAT
TGGTGATGCAAAAGAAGCGAAAGAACTACCATTCGTTGTAGGTGTAATGGGTGATTTTTCAGCTGCATCAGAGCTTGAGC
GTACAAAATTAAAAGATAAAAAATTCATTAATGTCGATTTAGATAATATTGATGAAGTAATGGAATCTCTGTCTCCAAGA
GCTGCTTTTCAAGTAGACAATACGTTGACAGAAGAAGGCGGTAAAATGGCTGTTGATTTAACATTTAAATCAATGGAAGA
TTTTCGCCCAGAAAATGTTGTACAGCAAGTTGATCCATTAAAGAAATTGGTTGAGGCGCGTGAGCGTTTAACCGATTTAA
GAAACAAAATTTCAAACAGTGAGCGTTTAGAAGATCTGCTTGATGAGGTTCTTAAAAATACTGATCAAATCCGTAAATTA
AGTGCGGAGGCCGATCATGAATAA
ATGGCTAAGAGAGAAAGCGTACAAAAGAAGCTTCAGCGAATTCGACCTCCACGTGTTCAGCTTACATATGATGTCGAAAT
TGGTGATGCAAAAGAAGCGAAAGAACTACCATTCGTTGTAGGTGTAATGGGTGATTTTTCAGCTGCATCAGAGCTTGAGC
GTACAAAATTAAAAGATAAAAAATTCATTAATGTCGATTTAGATAATATTGATGAAGTAATGGAATCTCTGTCTCCAAGA
GCTGCTTTTCAAGTAGACAATACGTTGACAGAAGAAGGCGGTAAAATGGCTGTTGATTTAACATTTAAATCAATGGAAGA
TTTTCGCCCAGAAAATGTTGTACAGCAAGTTGATCCATTAAAGAAATTGGTTGAGGCGCGTGAGCGTTTAACCGATTTAA
GAAACAAAATTTCAAACAGTGAGCGTTTAGAAGATCTGCTTGATGAGGTTCTTAAAAATACTGATCAAATCCGTAAATTA
AGTGCGGAGGCCGATCATGAATAA