Detailed information of component protein


Summary

Component ID T6CP014329
Component protein type TssI
T6SS ID (Type) T6SS01119 experimental (Type i4b)
Strain Acinetobacter baumannii strain UPAB1
Replicon chromosome
Sequence Protein sequence (877 a.a.); Nucleotide sequence (2631 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) D1G37_RS13945
Coordinate (Strand) 2933094..2935724 (+)
NCBI ID WP_002011259.1
RefSeq NZ_CP032215
Uniprot ID A0A427XA66_9GAMM, A0A0G4QP49_ACIBA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 5.7e-63 44..385
DUF2345 PF10106.11 8.9e-43 699..845
T6SS_Vgr PF13296.8 3.4e-38 566..672
Phage_base_V PF04717.14 4.8e-11 488..537
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-876 MMSHKIFQILDSLGLVAQNRVLHVQFSNASLNNQVFLQRIEGEHTLNQGSVAELLCLSTNAHIALKQFIGCQVAVDQVTDTGQFFRTTGIITEASQGQSDGSLTIYNLTLKDPTALWHKRRNSRVFMNKSVRDISEILFKEWQEKSPLFASSITLDTSGLTKDYDVRPFVMQSNESDYDFLTRLWRSEGINWLVDESQLFVADPNASIQPQVLRLIDDNQNYQALERRSIRYQRSSATEQFDTITQVKAERRLQPTSVHVQRWQADALQQEEGSGSVQGTQKHSEHYDNASLNLEDAWHVSPAWMQDLNGEDQATASGNSQIEQLNQHINAYHHLSSKQFTVAGNVRDAQVGYWFELNEHPELDQHDSADKEFLILSKHYYNQNNLPKELQQQLECLLPQGKLKAAQLDSQNPEQRHFAELNVVRRNIKAVPEYNPLEHRPAAHPQRARVVGLEGESIHVDQWGRIKVRFLFTRADDHSHDGGAGSNDNDTDSAWIDVLTPWAGAGYGARFLPRVGEIVVIDFFDGNIDRPFVVGRIHEAERHPTQFDQKGQLPDTKKLSGIRSEEVDGKGFNQLRFDDTTGQISAQLQSSHAASQLNLGNLSHPKDKAESDGRGEGFELRTDQWGAVRAGSGLLISTHKQDQAQGVHLDASEAKQQIEGGLNNAKALSEVAKNQQTDPLDMLENIQTFLEVLKQEDPKKAAEFQSAVMLLASPKSIAVSSNEDIHLSANGQLTQSAGDSINMSTQKNIVNHASQKISLFAAQEGARLFAGKGKVEIQAQGDGLDVIARKGVQITSTEDTVYITSPTEINLTANGSQVKLNGSGIFPVTGGKLEVKAGQHLFMGGSSINPPALDLPDCSAKQTQAAQNGSAKVDLS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9713 - -


  Protein sequence: 877 a.a.    

>T6CP014329 NZ_CP032215:2933094-2935724 [Acinetobacter baumannii] [TssI]
MMSHKIFQILDSLGLVAQNRVLHVQFSNASLNNQVFLQRIEGEHTLNQGSVAELLCLSTNAHIALKQFIGCQVAVDQVTD
TGQFFRTTGIITEASQGQSDGSLTIYNLTLKDPTALWHKRRNSRVFMNKSVRDISEILFKEWQEKSPLFASSITLDTSGL
TKDYDVRPFVMQSNESDYDFLTRLWRSEGINWLVDESQLFVADPNASIQPQVLRLIDDNQNYQALERRSIRYQRSSATEQ
FDTITQVKAERRLQPTSVHVQRWQADALQQEEGSGSVQGTQKHSEHYDNASLNLEDAWHVSPAWMQDLNGEDQATASGNS
QIEQLNQHINAYHHLSSKQFTVAGNVRDAQVGYWFELNEHPELDQHDSADKEFLILSKHYYNQNNLPKELQQQLECLLPQ
GKLKAAQLDSQNPEQRHFAELNVVRRNIKAVPEYNPLEHRPAAHPQRARVVGLEGESIHVDQWGRIKVRFLFTRADDHSH
DGGAGSNDNDTDSAWIDVLTPWAGAGYGARFLPRVGEIVVIDFFDGNIDRPFVVGRIHEAERHPTQFDQKGQLPDTKKLS
GIRSEEVDGKGFNQLRFDDTTGQISAQLQSSHAASQLNLGNLSHPKDKAESDGRGEGFELRTDQWGAVRAGSGLLISTHK
QDQAQGVHLDASEAKQQIEGGLNNAKALSEVAKNQQTDPLDMLENIQTFLEVLKQEDPKKAAEFQSAVMLLASPKSIAVS
SNEDIHLSANGQLTQSAGDSINMSTQKNIVNHASQKISLFAAQEGARLFAGKGKVEIQAQGDGLDVIARKGVQITSTEDT
VYITSPTEINLTANGSQVKLNGSGIFPVTGGKLEVKAGQHLFMGGSSINPPALDLPDCSAKQTQAAQNGSAKVDLS*

  Nucleotide sequence: 2631 bp    

>T6CP014329 NZ_CP032215:2933094-2935724 [Acinetobacter baumannii] [TssI]
ATGATGTCCCATAAAATATTTCAAATTTTAGATAGTTTAGGATTGGTCGCACAGAATCGCGTTCTTCATGTGCAATTTTC
CAACGCATCATTAAACAATCAAGTCTTCTTACAACGTATTGAAGGCGAACATACGCTTAATCAGGGCAGCGTTGCTGAGT
TATTGTGTCTGTCGACAAACGCCCATATTGCATTAAAACAGTTTATTGGCTGTCAGGTTGCCGTCGATCAGGTCACCGAT
ACAGGCCAGTTTTTTAGAACGACAGGTATTATTACCGAAGCCAGCCAAGGGCAAAGCGACGGCTCACTCACTATTTATAA
CCTCACCTTAAAAGACCCAACTGCACTCTGGCATAAACGCCGTAATAGCCGCGTGTTTATGAATAAAAGCGTGCGCGATA
TTAGTGAAATTCTGTTTAAGGAATGGCAGGAAAAAAGCCCGTTATTTGCCTCAAGCATAACGCTCGATACATCCGGCTTA
ACTAAAGACTACGATGTGCGTCCATTTGTGATGCAGTCAAATGAAAGCGATTATGACTTTTTAACCCGTTTGTGGCGTAG
TGAAGGTATTAACTGGTTGGTCGATGAGTCACAGCTTTTTGTCGCTGACCCGAATGCTTCTATCCAGCCACAAGTCTTAC
GTTTAATTGACGATAACCAAAATTATCAGGCACTTGAACGCCGTAGCATCCGCTATCAACGCAGCAGTGCGACAGAGCAG
TTCGATACCATTACCCAAGTCAAAGCTGAGCGTCGTTTACAACCAACCTCGGTTCATGTGCAACGCTGGCAAGCCGATGC
TTTGCAACAAGAAGAAGGTAGCGGCAGCGTACAAGGCACCCAAAAGCACAGCGAACACTATGACAATGCAAGCCTGAACC
TTGAAGATGCATGGCATGTTAGCCCAGCGTGGATGCAGGATCTAAACGGGGAAGATCAAGCCACAGCTTCAGGCAATAGC
CAGATTGAACAGCTTAACCAGCACATCAATGCTTACCATCACCTGAGTTCTAAACAGTTTACCGTTGCAGGGAATGTCCG
TGATGCACAGGTAGGTTACTGGTTTGAACTCAATGAACACCCAGAACTTGACCAACATGACAGTGCTGATAAAGAGTTCT
TAATCTTAAGCAAACACTACTATAACCAGAATAATTTACCGAAAGAATTACAACAGCAACTTGAGTGCCTATTACCACAA
GGCAAACTCAAGGCAGCCCAACTCGACAGTCAAAACCCTGAGCAGCGCCACTTTGCTGAGCTGAATGTCGTTCGTCGTAA
CATCAAAGCTGTGCCTGAATATAACCCGTTAGAGCACCGACCAGCCGCTCACCCACAGCGCGCTAGAGTGGTGGGTTTAG
AGGGTGAAAGCATTCATGTCGACCAGTGGGGACGCATTAAAGTCCGTTTCCTGTTTACCCGAGCTGATGACCACAGTCAT
GATGGTGGAGCAGGAAGTAACGACAATGACACCGACTCGGCTTGGATCGATGTGCTGACTCCATGGGCGGGTGCAGGTTA
TGGCGCACGTTTCTTGCCACGTGTTGGTGAAATTGTTGTCATCGATTTCTTTGACGGGAACATTGACCGCCCGTTTGTGG
TGGGGCGTATTCATGAAGCCGAGCGCCACCCGACCCAGTTTGACCAGAAAGGTCAGCTACCTGACACTAAAAAACTCAGC
GGCATTCGTTCAGAAGAAGTTGATGGCAAAGGCTTTAACCAACTCCGTTTTGATGACACCACAGGCCAAATCAGTGCCCA
GCTACAAAGTAGCCATGCGGCCAGCCAGCTAAACTTGGGTAACTTAAGCCATCCAAAAGACAAGGCGGAAAGTGATGGTC
GTGGGGAAGGTTTTGAACTCAGAACTGACCAATGGGGAGCAGTTCGAGCTGGTAGCGGCTTACTCATTAGTACCCACAAA
CAGGATCAGGCTCAAGGTGTACACCTTGATGCAAGTGAGGCCAAGCAACAAATCGAAGGCGGCCTCAACAATGCCAAGGC
ACTCAGTGAAGTTGCTAAAAATCAGCAAACTGACCCGTTAGATATGCTTGAGAATATTCAGACTTTCTTAGAAGTTCTCA
AACAAGAAGATCCTAAAAAAGCTGCTGAGTTTCAATCAGCAGTGATGCTGCTAGCATCTCCAAAAAGTATTGCTGTAAGT
AGTAATGAAGATATACACCTCAGTGCAAATGGTCAGCTCACTCAAAGTGCTGGAGATAGCATTAATATGAGTACGCAAAA
GAATATAGTGAATCATGCGAGCCAAAAGATTAGTCTCTTTGCTGCTCAGGAGGGTGCTCGACTTTTTGCTGGGAAGGGCA
AAGTAGAAATTCAAGCTCAAGGTGATGGCTTAGATGTCATTGCTCGAAAAGGTGTACAGATTACTTCAACCGAAGACACA
GTTTATATTACTAGCCCAACTGAGATTAATCTGACAGCAAACGGATCTCAAGTTAAGCTGAACGGTTCAGGTATTTTCCC
TGTTACGGGCGGTAAGCTTGAGGTGAAAGCTGGGCAGCACTTGTTTATGGGAGGGTCATCAATAAATCCGCCTGCTTTAG
ATTTACCAGACTGTTCGGCTAAGCAAACTCAAGCTGCTCAAAATGGTTCGGCTAAGGTAGATTTATCATGA