Detailed information of component protein


Summary

Component ID T6CP014266
Component protein type TssA
T6SS ID (Type) T6SS01112 experimental (Type i1)
Strain Vibrio cholerae strain A1552
Replicon chromosome
Sequence Protein sequence (470 a.a.); Nucleotide sequence (1410 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VCA1552_RS14780
Coordinate (Strand) 131144..132553 (+)
NCBI ID WP_000426093.1
RefSeq NZ_CP024868
Uniprot ID Q9KN46_VIBCH, A0A0X1L1Y9_VIBCO, A0A0H3AGW2_VIBC3, A0A0K9UXP5_VIBCL, A0A7U8WPS9_VIBCL, A0A0H3Q279_VIBCL, C3LUE3_VIBCM, A0A023PTI1_VIBCL
KEGG ID vcq:EN18_04320, vch:VCA0119, vcm:VCM66_A0117, vco:VC0395_0018
PDB ID 6RIU
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 1.8e-74 216..464
ImpA_N PF06812.14 9.6e-25 12..125
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-469 MEMTEYRQCVAKPISSSNPVGERLVDHPLFDFIEDQMMKVGSLSHASVQWDEVEHSTLKLLGEQSKDIKLLVYLLQCLHNQVTPTRLITSFAVMSEFLNQYWNDSYPAPGPRGNLPRRKFFSQMAQRFTTVIEKFDFHHLDEADRQALQAAVEEWQQAVEKQGLSSELVESVVVRITAEIKRAEQRQQVTAQSSAERETPSAATPSPAASMVVDHSSDKAAKQTLLKVADFLAEQEFGIALSIRLRRFAVWGSITSLPDHKPDGETLLRGMQADRVKDYQDQLRHPDLALWRKVEQSLTMAPYWFEGQWMSYTIAQQLGKSDWCQAIAEETQQFLRRLPSLLELKFKGGEPFVSDSVKEWLASVGQSQGAAGQSVGGDWQEKRKEAFQLAKEGGIAVALSMLNDGLVSAVEPRDKFYWRLLSADLLRANHLDAMAGEQYQTLLNQVTTLSVPEWEPSLVEQIQRYTTSE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9958 - -


  Protein sequence: 470 a.a.    

>T6CP014266 NZ_CP024868:131144-132553 [Vibrio cholerae] [TssA]
MEMTEYRQCVAKPISSSNPVGERLVDHPLFDFIEDQMMKVGSLSHASVQWDEVEHSTLKLLGEQSKDIKLLVYLLQCLHN
QVTPTRLITSFAVMSEFLNQYWNDSYPAPGPRGNLPRRKFFSQMAQRFTTVIEKFDFHHLDEADRQALQAAVEEWQQAVE
KQGLSSELVESVVVRITAEIKRAEQRQQVTAQSSAERETPSAATPSPAASMVVDHSSDKAAKQTLLKVADFLAEQEFGIA
LSIRLRRFAVWGSITSLPDHKPDGETLLRGMQADRVKDYQDQLRHPDLALWRKVEQSLTMAPYWFEGQWMSYTIAQQLGK
SDWCQAIAEETQQFLRRLPSLLELKFKGGEPFVSDSVKEWLASVGQSQGAAGQSVGGDWQEKRKEAFQLAKEGGIAVALS
MLNDGLVSAVEPRDKFYWRLLSADLLRANHLDAMAGEQYQTLLNQVTTLSVPEWEPSLVEQIQRYTTSE*

  Nucleotide sequence: 1410 bp    

>T6CP014266 NZ_CP024868:131144-132553 [Vibrio cholerae] [TssA]
ATGGAAATGACTGAATACCGTCAGTGTGTGGCCAAACCGATCAGCAGTAGCAATCCTGTCGGAGAGCGGCTAGTCGATCA
CCCACTGTTTGATTTTATTGAGGATCAGATGATGAAAGTGGGCTCTCTCTCTCACGCTTCAGTGCAGTGGGATGAAGTGG
AGCACAGCACTCTCAAACTGCTTGGTGAACAGAGTAAAGACATCAAGCTTTTGGTTTACCTGCTGCAGTGTCTGCATAAC
CAAGTTACCCCGACGCGCCTTATTACCTCGTTTGCGGTGATGAGTGAGTTCCTCAATCAATATTGGAACGACAGTTATCC
AGCGCCGGGCCCACGTGGCAATCTGCCGCGACGTAAATTTTTCAGCCAGATGGCGCAACGTTTTACCACGGTGATCGAAA
AGTTCGATTTTCATCATCTGGATGAAGCGGATCGCCAAGCGCTACAAGCGGCGGTTGAAGAGTGGCAACAAGCCGTTGAG
AAACAAGGGCTCTCTTCTGAGTTGGTGGAGTCTGTGGTGGTGCGAATTACCGCGGAGATCAAACGCGCAGAGCAGCGCCA
GCAAGTGACGGCGCAAAGCAGCGCGGAGCGTGAAACACCAAGTGCTGCAACGCCTTCTCCTGCGGCGAGTATGGTGGTGG
ATCATTCGAGTGACAAAGCAGCGAAACAAACCCTACTCAAAGTGGCAGATTTTCTTGCCGAACAAGAGTTTGGTATCGCT
CTTTCGATTCGTCTGCGCCGCTTTGCGGTGTGGGGCAGCATTACCTCATTGCCCGATCATAAACCCGATGGTGAAACACT
GCTGCGTGGAATGCAGGCGGATCGCGTCAAGGATTACCAAGATCAACTTCGTCACCCCGATTTAGCCTTGTGGCGCAAAG
TCGAACAGAGCTTAACCATGGCTCCTTATTGGTTTGAAGGACAGTGGATGAGTTACACCATTGCCCAGCAACTCGGCAAA
AGTGATTGGTGTCAGGCGATTGCCGAAGAAACACAACAGTTTTTACGTCGTTTGCCTTCGCTGCTTGAGCTCAAATTCAA
AGGCGGAGAGCCGTTTGTCAGCGATTCGGTCAAAGAGTGGCTGGCGAGCGTAGGTCAGAGCCAAGGTGCTGCGGGGCAAT
CGGTCGGCGGAGATTGGCAAGAGAAGCGTAAAGAGGCGTTTCAACTGGCTAAAGAAGGTGGAATCGCGGTGGCACTTTCC
ATGCTCAATGATGGCTTGGTCAGTGCGGTGGAGCCGCGAGACAAATTTTACTGGCGATTGCTATCGGCAGATCTGCTGCG
GGCAAATCATCTCGATGCGATGGCTGGTGAACAGTATCAAACTCTGCTCAATCAGGTAACGACGCTGTCTGTTCCTGAGT
GGGAACCGAGTTTAGTGGAACAAATTCAAAGATATACAACGTCAGAGTAA