SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP014010
Component protein type	TssB
T6SS ID (Type)	T6SS01088 (Type i1)
Strain	Vibrio anguillarum strain MHK3
Replicon	chromosome
Sequence	Protein sequence (170 a.a.); Nucleotide sequence (510 bp)
Reference	[1] Tang L, Yue S, Li GY, et al. Expression, secretion and bactericidal activity of type VI secretion system in Vibrio anguillarum. Arch Microbiol. 2016 Oct;198(8):751-60. doi: 10.1007/s00203-016-1236-2. Epub 2016 May 12. PMID: 27172981

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	CG015_RS14380
Coordinate (Strand)	262982..263491 (-)
NCBI ID	WP_017043584.1
RefSeq	NZ_CP022469
Uniprot ID	A0A233HMX1_9VIBR, A0A6B2BV00_9VIBR, A0A191W9J3_VIBAN
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_VipA	PF05591.14	4e-57	6..157

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-169	MSKEGSVAPKERINIKYIPATGDAQAEVELPLKTLVVGDFKGHTEETPLEERQTVSVDKNNFEAVMRESDLKLTTTVRNKLSGDENAELPVELSFKSLADFEPDSVAAQVPELNKLVELRQALVALKGPLGNIPAFRERLQELLNSEESREKLLSELSLVSGKEEEPQA

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9877	-	-

Protein sequence: 170 a.a.

						>T6CP014010 NZ_CP022469:c263491-262982 [Vibrio anguillarum] [TssB]
MSKEGSVAPKERINIKYIPATGDAQAEVELPLKTLVVGDFKGHTEETPLEERQTVSVDKNNFEAVMRESDLKLTTTVRNK
LSGDENAELPVELSFKSLADFEPDSVAAQVPELNKLVELRQALVALKGPLGNIPAFRERLQELLNSEESREKLLSELSLV
SGKEEEPQA*					

Nucleotide sequence: 510 bp

						>T6CP014010 NZ_CP022469:c263491-262982 [Vibrio anguillarum] [TssB]
ATGTCTAAAGAAGGAAGTGTAGCTCCTAAAGAGCGGATTAATATTAAGTATATTCCAGCAACGGGAGATGCACAGGCTGA
AGTTGAGTTACCGCTAAAAACTCTGGTGGTGGGTGATTTTAAAGGCCATACCGAAGAGACCCCACTTGAAGAGAGACAGA
CCGTTTCAGTGGACAAGAACAACTTTGAAGCGGTTATGCGTGAAAGCGATTTGAAACTGACCACTACAGTGCGCAATAAA
CTGAGTGGCGATGAAAATGCTGAGCTTCCTGTTGAGCTTAGTTTCAAATCTCTTGCTGACTTCGAACCGGATTCAGTGGC
AGCACAAGTTCCAGAATTAAATAAATTGGTTGAGCTACGCCAAGCTCTTGTGGCCTTAAAAGGTCCTTTGGGCAATATTC
CCGCGTTTAGAGAGCGTCTACAAGAGCTACTAAATTCGGAAGAATCGCGTGAAAAACTTCTATCTGAGCTAAGCCTAGTG
AGCGGCAAAGAAGAAGAGCCTCAAGCATAA					