Detailed information of component protein
Summary
Component ID | T6CP014009 |
Component protein type | TssC |
T6SS ID (Type) | T6SS01088 (Type i1) |
Strain | Vibrio anguillarum strain MHK3 |
Replicon | chromosome |
Sequence | Protein sequence (492 a.a.); Nucleotide sequence (1476 bp) |
Reference |
External database links
Locus tag (Gene) | CG015_RS14375 |
Coordinate (Strand) | 261457..262932 (-) |
NCBI ID | WP_026027753.1 |
RefSeq | NZ_CP022469 |
Uniprot ID | A0A233HNL4_9VIBR, A0A191W9L9_VIBAN |
KEGG ID | vau:VANGNB10_cII0071 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VipB | PF05943.14 | 7e-125 | 65..364 |
VipB_2 | PF18945.2 | 6.5e-45 | 377..488 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-491 | MSTTEAVLERQSATQGSLLDEIMAQTRIAPTEEGYDVAKKGVAAFIENLIGSNQTEEPVNKSLVDQMLVELDKKISAQMDEILHEERFQQMESSWRGLKLFIDRTDFRENNKVDLLHVTKGELLEDFEFAPETTQSGLYKHVYSSGYGQFGGEPTGAIIGNFAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPEFFGIDSFEELPNIKDLKSTFESPKYTKWRSLRESEDARYLGLTAPRFLLRVPYDPTENPIKSFNYVESVSASHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGALQSKIPTEVLVTDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKPKIFPNTKEGKEAETNYKLGTQLPYMMIINRLAHYVKVLQREQIGAWKERQDLERELNGWIKQYVADQENPPADVRSRRPLRAAKIEVMDVEGEPGWYQVSLSVRPHFKYMGANFELSLVGRLDQA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9897 | - | - |
Protein sequence: 492 a.a.
>T6CP014009 NZ_CP022469:c262932-261457 [Vibrio anguillarum] [TssC]
MSTTEAVLERQSATQGSLLDEIMAQTRIAPTEEGYDVAKKGVAAFIENLIGSNQTEEPVNKSLVDQMLVELDKKISAQMD
EILHEERFQQMESSWRGLKLFIDRTDFRENNKVDLLHVTKGELLEDFEFAPETTQSGLYKHVYSSGYGQFGGEPTGAIIG
NFAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPEFFGIDSFEELPNIKDLKSTFESPKYTKWRSLRESEDARYLGLTAP
RFLLRVPYDPTENPIKSFNYVESVSASHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGAL
QSKIPTEVLVTDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKPKIFPNTKEGKEAETNYKLGTQLPYMMIINRLAHY
VKVLQREQIGAWKERQDLERELNGWIKQYVADQENPPADVRSRRPLRAAKIEVMDVEGEPGWYQVSLSVRPHFKYMGANF
ELSLVGRLDQA*
MSTTEAVLERQSATQGSLLDEIMAQTRIAPTEEGYDVAKKGVAAFIENLIGSNQTEEPVNKSLVDQMLVELDKKISAQMD
EILHEERFQQMESSWRGLKLFIDRTDFRENNKVDLLHVTKGELLEDFEFAPETTQSGLYKHVYSSGYGQFGGEPTGAIIG
NFAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPEFFGIDSFEELPNIKDLKSTFESPKYTKWRSLRESEDARYLGLTAP
RFLLRVPYDPTENPIKSFNYVESVSASHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGAL
QSKIPTEVLVTDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKPKIFPNTKEGKEAETNYKLGTQLPYMMIINRLAHY
VKVLQREQIGAWKERQDLERELNGWIKQYVADQENPPADVRSRRPLRAAKIEVMDVEGEPGWYQVSLSVRPHFKYMGANF
ELSLVGRLDQA*
Nucleotide sequence: 1476 bp
>T6CP014009 NZ_CP022469:c262932-261457 [Vibrio anguillarum] [TssC]
ATGTCTACTACTGAAGCCGTCTTAGAGAGACAAAGTGCCACCCAAGGCAGTTTACTTGATGAAATCATGGCACAAACGCG
CATTGCACCGACTGAAGAAGGGTATGATGTTGCGAAGAAAGGGGTTGCTGCGTTTATTGAGAATCTCATCGGTTCGAATC
AAACGGAAGAGCCGGTTAACAAATCACTCGTTGATCAAATGCTGGTTGAGCTTGATAAGAAAATCAGTGCTCAAATGGAT
GAGATTTTGCACGAAGAGCGTTTCCAGCAGATGGAATCGTCATGGCGTGGTTTGAAACTGTTTATTGACCGTACCGATTT
TCGTGAAAACAACAAGGTTGATTTGTTGCATGTAACGAAAGGCGAGTTGCTTGAAGACTTTGAATTTGCACCAGAAACGA
CGCAATCTGGTCTTTATAAGCACGTTTATTCTTCTGGTTATGGCCAATTTGGTGGTGAGCCGACTGGCGCTATCATCGGT
AACTTTGCTTTCACGCCATCAACCCCTGACATGAAGCTACTGCAATACATGGGTGCACTTGGTGCGATGGCTCATGCTCC
ATTCATTTCTAGTGTAGGCCCTGAGTTTTTTGGTATCGATTCTTTTGAAGAGCTACCAAATATCAAGGATCTTAAGTCAA
CATTTGAAAGCCCTAAATACACTAAATGGCGTTCTCTACGTGAATCAGAAGATGCGCGTTACCTTGGCTTGACTGCGCCT
CGTTTCTTATTGCGCGTACCTTATGATCCAACAGAAAACCCAATTAAATCATTTAATTATGTGGAAAGTGTCAGCGCTTC
ACACGAACACTATCTATGGGGTAACACCGCGTTTGCTTTCGCTACTCGTTTAACCGATAGCTTTGCCAAGTACCGTTGGT
GTCCAAACATCATTGGCCCACAAAGTGGCGGTGCGGTTGAAGATCTGCCAGTACACGTGTTTGAATCGATGGGTGCACTG
CAAAGTAAGATCCCAACTGAAGTGTTGGTGACTGACCGTAAAGAGTTTGAATTAGCAGAAGAAGGTTTCATTGCTTTAAC
CATGCGTAAAGGCAGTGATAACGCCGCATTCTTCTCTGCAAACTCGATCCAAAAGCCAAAAATATTCCCGAATACCAAAG
AAGGCAAAGAAGCAGAAACCAACTACAAGTTGGGTACGCAACTGCCATATATGATGATCATCAATCGCCTTGCACACTAC
GTCAAAGTGCTACAGCGTGAGCAAATTGGTGCTTGGAAAGAGCGTCAAGATCTTGAACGCGAGCTTAATGGTTGGATCAA
ACAGTACGTGGCTGACCAAGAAAATCCACCAGCAGACGTACGTAGCCGTCGTCCTCTTCGTGCTGCAAAAATCGAAGTCA
TGGATGTTGAAGGTGAACCAGGTTGGTATCAGGTCTCTCTCTCTGTTCGTCCTCACTTTAAGTACATGGGCGCGAACTTT
GAATTGTCATTGGTTGGTCGATTAGATCAAGCATAA
ATGTCTACTACTGAAGCCGTCTTAGAGAGACAAAGTGCCACCCAAGGCAGTTTACTTGATGAAATCATGGCACAAACGCG
CATTGCACCGACTGAAGAAGGGTATGATGTTGCGAAGAAAGGGGTTGCTGCGTTTATTGAGAATCTCATCGGTTCGAATC
AAACGGAAGAGCCGGTTAACAAATCACTCGTTGATCAAATGCTGGTTGAGCTTGATAAGAAAATCAGTGCTCAAATGGAT
GAGATTTTGCACGAAGAGCGTTTCCAGCAGATGGAATCGTCATGGCGTGGTTTGAAACTGTTTATTGACCGTACCGATTT
TCGTGAAAACAACAAGGTTGATTTGTTGCATGTAACGAAAGGCGAGTTGCTTGAAGACTTTGAATTTGCACCAGAAACGA
CGCAATCTGGTCTTTATAAGCACGTTTATTCTTCTGGTTATGGCCAATTTGGTGGTGAGCCGACTGGCGCTATCATCGGT
AACTTTGCTTTCACGCCATCAACCCCTGACATGAAGCTACTGCAATACATGGGTGCACTTGGTGCGATGGCTCATGCTCC
ATTCATTTCTAGTGTAGGCCCTGAGTTTTTTGGTATCGATTCTTTTGAAGAGCTACCAAATATCAAGGATCTTAAGTCAA
CATTTGAAAGCCCTAAATACACTAAATGGCGTTCTCTACGTGAATCAGAAGATGCGCGTTACCTTGGCTTGACTGCGCCT
CGTTTCTTATTGCGCGTACCTTATGATCCAACAGAAAACCCAATTAAATCATTTAATTATGTGGAAAGTGTCAGCGCTTC
ACACGAACACTATCTATGGGGTAACACCGCGTTTGCTTTCGCTACTCGTTTAACCGATAGCTTTGCCAAGTACCGTTGGT
GTCCAAACATCATTGGCCCACAAAGTGGCGGTGCGGTTGAAGATCTGCCAGTACACGTGTTTGAATCGATGGGTGCACTG
CAAAGTAAGATCCCAACTGAAGTGTTGGTGACTGACCGTAAAGAGTTTGAATTAGCAGAAGAAGGTTTCATTGCTTTAAC
CATGCGTAAAGGCAGTGATAACGCCGCATTCTTCTCTGCAAACTCGATCCAAAAGCCAAAAATATTCCCGAATACCAAAG
AAGGCAAAGAAGCAGAAACCAACTACAAGTTGGGTACGCAACTGCCATATATGATGATCATCAATCGCCTTGCACACTAC
GTCAAAGTGCTACAGCGTGAGCAAATTGGTGCTTGGAAAGAGCGTCAAGATCTTGAACGCGAGCTTAATGGTTGGATCAA
ACAGTACGTGGCTGACCAAGAAAATCCACCAGCAGACGTACGTAGCCGTCGTCCTCTTCGTGCTGCAAAAATCGAAGTCA
TGGATGTTGAAGGTGAACCAGGTTGGTATCAGGTCTCTCTCTCTGTTCGTCCTCACTTTAAGTACATGGGCGCGAACTTT
GAATTGTCATTGGTTGGTCGATTAGATCAAGCATAA