Detailed information of component protein


Summary

Component ID T6CP014008
Component protein type TssF
T6SS ID (Type) T6SS01088 experimental (Type i1)
Strain Vibrio anguillarum strain MHK3
Replicon chromosome
Sequence Protein sequence (590 a.a.); Nucleotide sequence (1770 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CG015_RS14365
Coordinate (Strand) 259241..261010 (-)
NCBI ID WP_129532913.1
RefSeq NZ_CP022469
Uniprot ID UPI000B7BD977
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 7.6e-152 5..584
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-589 MAQDKYFREELAFLKEQGKHFTEIHPQLSRFLHGKTTDPDVERLLEGFAFLTARLREKVEDEFPELTHSIINMLWPNYLRPVPSMSIVSFIPDKSVSDKQQIARGTQLDSKPVFGTKCHFRTCRDVQIYPLKCTDVTAQHTREATIIEVSLNMLGEISVGDAHLDDLRFYLGGDKYSSQMLYLWLNHYLDKISVEVAGVEFTLPRNSFQTVGFDSEQSLLPYPSNVYEGYRVLQEYLSFPEAFHFVDITRLASVVPKSVHGAFKLKISFSKTLPADVRVRQDNFQLYCTPVINLFEHDADPIDLTGKRSEYRIIPSSRYPSHYEVFSVDGVFGWQDKTQASQRIRGEKRVYSAFESFQHEVERVRNREALYYRTRVRDSIRGDGFDNFISFIRGDETQSMHVDEAISLKLTCTNRLLPLELGVGDICEPTDSSPPFATFSNITVPSQSLRPVLDGSLLWVLISNLSLNYLSLLSKDALSSVLRAYDFRALVDRQAERVARLRLEGIQKIESQPVDKILRGLPVRGLQSTIHIDQNCFGSEGELYLFGTVLSHFFALYASINSFHELIVINASNQEKYTWGTQTGMQPLI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9944 - -


  Protein sequence: 590 a.a.    

>T6CP014008 NZ_CP022469:c261010-259241 [Vibrio anguillarum] [TssF]
MAQDKYFREELAFLKEQGKHFTEIHPQLSRFLHGKTTDPDVERLLEGFAFLTARLREKVEDEFPELTHSIINMLWPNYLR
PVPSMSIVSFIPDKSVSDKQQIARGTQLDSKPVFGTKCHFRTCRDVQIYPLKCTDVTAQHTREATIIEVSLNMLGEISVG
DAHLDDLRFYLGGDKYSSQMLYLWLNHYLDKISVEVAGVEFTLPRNSFQTVGFDSEQSLLPYPSNVYEGYRVLQEYLSFP
EAFHFVDITRLASVVPKSVHGAFKLKISFSKTLPADVRVRQDNFQLYCTPVINLFEHDADPIDLTGKRSEYRIIPSSRYP
SHYEVFSVDGVFGWQDKTQASQRIRGEKRVYSAFESFQHEVERVRNREALYYRTRVRDSIRGDGFDNFISFIRGDETQSM
HVDEAISLKLTCTNRLLPLELGVGDICEPTDSSPPFATFSNITVPSQSLRPVLDGSLLWVLISNLSLNYLSLLSKDALSS
VLRAYDFRALVDRQAERVARLRLEGIQKIESQPVDKILRGLPVRGLQSTIHIDQNCFGSEGELYLFGTVLSHFFALYASI
NSFHELIVINASNQEKYTWGTQTGMQPLI*

  Nucleotide sequence: 1770 bp    

>T6CP014008 NZ_CP022469:c261010-259241 [Vibrio anguillarum] [TssF]
ATGGCTCAAGATAAGTACTTCAGAGAAGAGCTTGCTTTCCTTAAAGAACAAGGAAAGCATTTCACTGAAATTCATCCTCA
ACTCTCTCGCTTTTTACACGGTAAAACGACGGATCCTGATGTCGAACGTTTATTGGAAGGCTTCGCCTTTCTCACCGCTC
GCTTGCGCGAAAAAGTTGAAGATGAATTTCCTGAGCTAACGCACTCCATCATCAATATGCTGTGGCCAAACTACTTACGT
CCTGTGCCAAGCATGAGTATTGTCTCGTTCATACCGGATAAAAGTGTCAGTGATAAGCAGCAAATCGCTCGTGGCACTCA
GCTCGATAGCAAGCCTGTTTTCGGCACCAAATGTCACTTTAGAACCTGTCGTGACGTGCAGATTTACCCACTGAAATGTA
CTGACGTCACTGCGCAACATACTAGAGAAGCGACCATCATCGAAGTGTCGCTTAATATGTTGGGTGAGATAAGCGTCGGT
GATGCGCATCTTGATGATCTGCGCTTTTACTTAGGTGGTGATAAATACAGCTCACAAATGCTCTATTTATGGCTCAACCA
CTACCTCGATAAGATTTCTGTTGAAGTCGCGGGGGTAGAATTTACGCTGCCGCGCAATAGCTTCCAAACGGTCGGATTTG
ATAGCGAGCAGTCGCTTTTGCCCTATCCTTCCAATGTGTATGAAGGTTATCGCGTTTTGCAGGAATACTTGTCGTTTCCT
GAAGCATTTCATTTTGTTGACATTACCCGTCTGGCTAGCGTAGTGCCGAAATCAGTGCATGGTGCGTTCAAACTGAAAAT
CAGTTTTTCGAAAACCTTGCCAGCGGACGTTCGAGTGCGTCAGGATAATTTCCAGTTGTACTGCACCCCGGTCATTAATT
TGTTTGAACATGATGCCGATCCGATCGATTTAACGGGCAAGCGTTCAGAGTATCGCATTATTCCCTCTAGTCGTTACCCT
TCTCACTATGAAGTGTTCAGCGTTGACGGCGTGTTCGGTTGGCAAGACAAAACTCAAGCCAGCCAACGAATTCGGGGTGA
AAAACGTGTCTATTCAGCATTTGAAAGTTTTCAGCATGAAGTGGAGCGGGTTCGAAATCGTGAAGCGCTCTACTACCGCA
CACGAGTGAGAGACAGTATCCGTGGCGATGGATTTGATAATTTCATCTCTTTCATTCGCGGAGATGAAACGCAATCCATG
CATGTCGATGAAGCCATCTCGCTCAAACTCACCTGCACCAATCGCTTATTACCGCTCGAACTAGGTGTCGGTGACATTTG
TGAGCCGACAGACAGCTCGCCCCCCTTTGCCACTTTCAGCAATATTACCGTGCCTTCACAATCTCTGCGCCCAGTACTGG
ATGGCAGTCTATTGTGGGTATTGATTTCTAACTTATCGCTGAATTATTTATCGCTGCTGTCCAAAGATGCCTTAAGCAGT
GTGTTGCGAGCTTACGATTTCAGAGCCTTGGTGGATCGCCAAGCGGAGCGTGTTGCGCGTTTGCGTCTTGAAGGGATCCA
AAAAATTGAGTCGCAACCCGTGGATAAAATATTGCGCGGTTTGCCAGTGCGAGGGCTGCAATCGACGATTCATATTGATC
AAAACTGTTTTGGTTCAGAAGGGGAGCTTTACCTCTTTGGCACAGTGCTTAGCCACTTTTTTGCCCTCTATGCCAGCATC
AATTCGTTTCATGAGCTGATCGTTATTAACGCGTCCAATCAAGAGAAGTACACATGGGGAACACAGACAGGAATGCAGCC
ATTGATCTAG