Detailed information of component protein
Summary
Component ID | T6CP014005 |
Component protein type | TssK |
T6SS ID (Type) | T6SS01088 (Type i1) |
Strain | Vibrio anguillarum strain MHK3 |
Replicon | chromosome |
Sequence | Protein sequence (445 a.a.); Nucleotide sequence (1335 bp) |
Reference |
External database links
Locus tag (Gene) | CG015_RS14345 |
Coordinate (Strand) | 254957..256291 (-) |
NCBI ID | WP_017044997.1 |
RefSeq | NZ_CP022469 |
Uniprot ID | A0A233IFS4_9GAMM, A0A233HMY4_9VIBR, A0A6B2BL57_9VIBR, A0A7Y3QW30_9VIBR, B6SDI6_VIBAN, A0A7U4CVD7_VIBAN |
KEGG ID | vau:VANGNB10_cII0077 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_VasE | PF05936.14 | 5.8e-156 | 19..442 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-444 | MFARNRVIWNEGLFIKPQHFQQQQRYFEYHIDERISSVSGYLYGVSELSLNPEYLSFGRIAIERAVGIMPDGTVFRIPQEDVLPDALEIADASLANQLVYLAVPLRSESLMEINWPEERGTGRYLSNRLEVRDVHTVRGDTTTLDVSPVRVQLMLEKEDRSSYASIAIARILEKRPDGSVVLDPDFIPCHLNVASNAALHRFINEISGLMRERAKNIAQRISSPSQGGVADVSDFMLLQALNRLQPQMQHLAELRSLHPERLFECLSCVCGELATFTDESRLPPSIPSYNHEMPTHSFGPLIRNLRQSLSIVLEPRAVSIQLDKRKYGLMVAPIHDPQLVESAEFIIAVKARMPLDELRRLFTQQTKVSSVEKIRELISLQLPGIPITPLPVAPRQLPYHAGYTYYQLDKTSSAWSMLGRSSGFAFHVAGAFEDLDLQFWAIRS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9945 | - | - |
Protein sequence: 445 a.a.
>T6CP014005 NZ_CP022469:c256291-254957 [Vibrio anguillarum] [TssK]
MFARNRVIWNEGLFIKPQHFQQQQRYFEYHIDERISSVSGYLYGVSELSLNPEYLSFGRIAIERAVGIMPDGTVFRIPQE
DVLPDALEIADASLANQLVYLAVPLRSESLMEINWPEERGTGRYLSNRLEVRDVHTVRGDTTTLDVSPVRVQLMLEKEDR
SSYASIAIARILEKRPDGSVVLDPDFIPCHLNVASNAALHRFINEISGLMRERAKNIAQRISSPSQGGVADVSDFMLLQA
LNRLQPQMQHLAELRSLHPERLFECLSCVCGELATFTDESRLPPSIPSYNHEMPTHSFGPLIRNLRQSLSIVLEPRAVSI
QLDKRKYGLMVAPIHDPQLVESAEFIIAVKARMPLDELRRLFTQQTKVSSVEKIRELISLQLPGIPITPLPVAPRQLPYH
AGYTYYQLDKTSSAWSMLGRSSGFAFHVAGAFEDLDLQFWAIRS*
MFARNRVIWNEGLFIKPQHFQQQQRYFEYHIDERISSVSGYLYGVSELSLNPEYLSFGRIAIERAVGIMPDGTVFRIPQE
DVLPDALEIADASLANQLVYLAVPLRSESLMEINWPEERGTGRYLSNRLEVRDVHTVRGDTTTLDVSPVRVQLMLEKEDR
SSYASIAIARILEKRPDGSVVLDPDFIPCHLNVASNAALHRFINEISGLMRERAKNIAQRISSPSQGGVADVSDFMLLQA
LNRLQPQMQHLAELRSLHPERLFECLSCVCGELATFTDESRLPPSIPSYNHEMPTHSFGPLIRNLRQSLSIVLEPRAVSI
QLDKRKYGLMVAPIHDPQLVESAEFIIAVKARMPLDELRRLFTQQTKVSSVEKIRELISLQLPGIPITPLPVAPRQLPYH
AGYTYYQLDKTSSAWSMLGRSSGFAFHVAGAFEDLDLQFWAIRS*
Nucleotide sequence: 1335 bp
>T6CP014005 NZ_CP022469:c256291-254957 [Vibrio anguillarum] [TssK]
ATGTTTGCGCGTAATCGTGTCATTTGGAATGAAGGTCTATTCATTAAACCGCAGCATTTCCAGCAGCAGCAACGCTATTT
TGAATATCATATTGATGAACGCATCTCATCAGTCAGTGGCTACCTTTACGGAGTATCAGAGTTATCACTTAACCCTGAAT
ATCTCTCTTTTGGCCGTATCGCGATCGAACGTGCGGTCGGCATTATGCCTGATGGAACCGTTTTCCGTATTCCTCAGGAA
GATGTGTTGCCCGATGCGCTCGAGATTGCCGATGCTTCGCTTGCAAACCAGTTGGTCTATTTAGCGGTGCCACTTCGCAG
TGAATCGTTAATGGAGATTAACTGGCCCGAAGAGCGTGGAACAGGGCGTTACTTAAGCAATCGTTTAGAAGTGCGTGATG
TGCATACCGTGCGTGGTGACACCACGACGCTAGATGTCTCACCTGTTCGTGTGCAGTTGATGCTTGAAAAAGAAGACAGA
AGCTCTTATGCCTCAATTGCGATCGCTCGTATTTTAGAAAAACGTCCTGATGGCAGTGTCGTGCTCGATCCGGATTTTAT
TCCGTGCCATCTTAATGTTGCGAGCAATGCGGCTTTGCACCGTTTTATTAACGAAATCTCTGGGTTAATGCGCGAACGTG
CCAAAAACATTGCTCAACGTATCAGCTCTCCCTCTCAAGGCGGGGTCGCGGATGTGTCTGACTTTATGTTGTTGCAAGCC
CTGAATCGCTTACAACCCCAGATGCAACACTTGGCAGAGCTACGCAGTTTGCACCCGGAACGTTTATTTGAGTGCCTGTC
ATGCGTATGTGGAGAATTGGCTACATTTACCGATGAAAGTCGTTTACCACCGAGCATCCCGAGCTACAACCATGAAATGC
CGACCCACTCTTTTGGGCCGCTGATCCGCAACTTAAGACAGAGCCTAAGTATCGTACTTGAGCCTAGAGCGGTCTCGATT
CAGTTGGATAAACGTAAGTACGGCCTGATGGTTGCCCCAATCCACGACCCTCAACTAGTTGAAAGCGCAGAATTCATCAT
CGCGGTGAAAGCACGCATGCCATTAGATGAACTGCGTCGTCTCTTTACTCAGCAGACCAAAGTATCGTCAGTGGAGAAAA
TCCGCGAGCTCATTTCACTGCAATTACCGGGCATTCCAATTACACCGTTACCAGTGGCACCAAGGCAGCTGCCTTACCAC
GCCGGTTATACCTATTACCAATTGGATAAAACCAGCTCAGCATGGTCGATGTTAGGTCGCTCAAGTGGTTTTGCTTTCCA
TGTCGCGGGTGCGTTTGAAGATCTTGACCTGCAATTCTGGGCGATTAGGAGCTGA
ATGTTTGCGCGTAATCGTGTCATTTGGAATGAAGGTCTATTCATTAAACCGCAGCATTTCCAGCAGCAGCAACGCTATTT
TGAATATCATATTGATGAACGCATCTCATCAGTCAGTGGCTACCTTTACGGAGTATCAGAGTTATCACTTAACCCTGAAT
ATCTCTCTTTTGGCCGTATCGCGATCGAACGTGCGGTCGGCATTATGCCTGATGGAACCGTTTTCCGTATTCCTCAGGAA
GATGTGTTGCCCGATGCGCTCGAGATTGCCGATGCTTCGCTTGCAAACCAGTTGGTCTATTTAGCGGTGCCACTTCGCAG
TGAATCGTTAATGGAGATTAACTGGCCCGAAGAGCGTGGAACAGGGCGTTACTTAAGCAATCGTTTAGAAGTGCGTGATG
TGCATACCGTGCGTGGTGACACCACGACGCTAGATGTCTCACCTGTTCGTGTGCAGTTGATGCTTGAAAAAGAAGACAGA
AGCTCTTATGCCTCAATTGCGATCGCTCGTATTTTAGAAAAACGTCCTGATGGCAGTGTCGTGCTCGATCCGGATTTTAT
TCCGTGCCATCTTAATGTTGCGAGCAATGCGGCTTTGCACCGTTTTATTAACGAAATCTCTGGGTTAATGCGCGAACGTG
CCAAAAACATTGCTCAACGTATCAGCTCTCCCTCTCAAGGCGGGGTCGCGGATGTGTCTGACTTTATGTTGTTGCAAGCC
CTGAATCGCTTACAACCCCAGATGCAACACTTGGCAGAGCTACGCAGTTTGCACCCGGAACGTTTATTTGAGTGCCTGTC
ATGCGTATGTGGAGAATTGGCTACATTTACCGATGAAAGTCGTTTACCACCGAGCATCCCGAGCTACAACCATGAAATGC
CGACCCACTCTTTTGGGCCGCTGATCCGCAACTTAAGACAGAGCCTAAGTATCGTACTTGAGCCTAGAGCGGTCTCGATT
CAGTTGGATAAACGTAAGTACGGCCTGATGGTTGCCCCAATCCACGACCCTCAACTAGTTGAAAGCGCAGAATTCATCAT
CGCGGTGAAAGCACGCATGCCATTAGATGAACTGCGTCGTCTCTTTACTCAGCAGACCAAAGTATCGTCAGTGGAGAAAA
TCCGCGAGCTCATTTCACTGCAATTACCGGGCATTCCAATTACACCGTTACCAGTGGCACCAAGGCAGCTGCCTTACCAC
GCCGGTTATACCTATTACCAATTGGATAAAACCAGCTCAGCATGGTCGATGTTAGGTCGCTCAAGTGGTTTTGCTTTCCA
TGTCGCGGGTGCGTTTGAAGATCTTGACCTGCAATTCTGGGCGATTAGGAGCTGA