Detailed information of component protein


Summary

Component ID T6CP014003
Component protein type TssH
T6SS ID (Type) T6SS01088 experimental (Type i1)
Strain Vibrio anguillarum strain MHK3
Replicon chromosome
Sequence Protein sequence (873 a.a.); Nucleotide sequence (2619 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CG015_RS14335
Coordinate (Strand) 251539..254157 (-)
NCBI ID WP_029189701.1
RefSeq NZ_CP022469
Uniprot ID A0A241NK67_VIBAN
KEGG ID vau:VANGNB10_cII0079
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 3.4e-39 610..772
AAA_lid_9 PF17871.3 7.1e-29 363..453
ClpB_D2-small PF10431.11 2.6e-11 777..849
AAA PF00004.31 9e-09 223..353
Clp_N PF02861.22 2.5e-06 24..73
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-872 VIRIELPTLISKLNEQSKLALEQAASLCIERQHPEVTYEHFLHVLLENPLSDVRVIAKHANLDVETVKQAISASYAREQVLDTYPAFSPLLVELLQEAWLLSTTELNQNQLRSGVVFLAALMRADRYLPLKLIRLFEHINKESLNKGFDTLLQDSSESAVEKSKAGSQAPAALDAASSSPLHKYCTNVTAQARNGELDPVLCRENELNLMIDILCRRRKNNPIVVGDAGVGKSAMIEGLALRVVAGNVPTQLQNVELCSLDLGLLQAGASVKGEFEKRLKGVIDAIKTSPKPIILFIDEAHTLIGSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLEEPSISQAVDILRGLNRVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAINITTPPKRLAQLETACHQRQLEIDMLERAQYLGQVVDSHRLDELCSQEVADEAEKATLTQSWQEQKAIIERIITLRDQLLDGAEDHGEQTQVERDELLVQLQEQYRALEEIPHNDRLMHPQVDAQQIAEVIADWTGVPVDQMNSDELHKITHLTAILGEAIKGQDTAIERVHRNLLTARADLRRPGRPKGSFLLVGPSGVGKTETVVQLAQQLYGGKQFLTTINMSEYQEKHTVSRLIGSPPGYVGYGEGGILTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQAFDKGELADGEGRVIDCQNIVFFLTSNLGYQTIVDYAQQPQLLDEQLYPELAAFFKPALLARMEIIPYLPLSKEVLEQIVRGKLTRLEQLFKQRYAADVVIEDSLIEEILSRATRSENGARMLEAIIEGQLLPPISLALLNKLADKQPVQRIYLAAEEGEFIGEVE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9957 - -


  Protein sequence: 873 a.a.    

>T6CP014003 NZ_CP022469:c254157-251539 [Vibrio anguillarum] [TssH]
VIRIELPTLISKLNEQSKLALEQAASLCIERQHPEVTYEHFLHVLLENPLSDVRVIAKHANLDVETVKQAISASYAREQV
LDTYPAFSPLLVELLQEAWLLSTTELNQNQLRSGVVFLAALMRADRYLPLKLIRLFEHINKESLNKGFDTLLQDSSESAV
EKSKAGSQAPAALDAASSSPLHKYCTNVTAQARNGELDPVLCRENELNLMIDILCRRRKNNPIVVGDAGVGKSAMIEGLA
LRVVAGNVPTQLQNVELCSLDLGLLQAGASVKGEFEKRLKGVIDAIKTSPKPIILFIDEAHTLIGSGNQEGGSDAANLLK
PALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLEEPSISQAVDILRGLNRVYEKAHNVLITDDALKAAAELSARY
ISGRQLPDKAIDVLDTACARIAINITTPPKRLAQLETACHQRQLEIDMLERAQYLGQVVDSHRLDELCSQEVADEAEKAT
LTQSWQEQKAIIERIITLRDQLLDGAEDHGEQTQVERDELLVQLQEQYRALEEIPHNDRLMHPQVDAQQIAEVIADWTGV
PVDQMNSDELHKITHLTAILGEAIKGQDTAIERVHRNLLTARADLRRPGRPKGSFLLVGPSGVGKTETVVQLAQQLYGGK
QFLTTINMSEYQEKHTVSRLIGSPPGYVGYGEGGILTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQAFDKGELADGEGRV
IDCQNIVFFLTSNLGYQTIVDYAQQPQLLDEQLYPELAAFFKPALLARMEIIPYLPLSKEVLEQIVRGKLTRLEQLFKQR
YAADVVIEDSLIEEILSRATRSENGARMLEAIIEGQLLPPISLALLNKLADKQPVQRIYLAAEEGEFIGEVE*

  Nucleotide sequence: 2619 bp    

>T6CP014003 NZ_CP022469:c254157-251539 [Vibrio anguillarum] [TssH]
GTGATCCGTATTGAATTACCCACATTAATTTCAAAACTCAATGAACAGAGTAAGCTAGCCCTAGAGCAAGCCGCTTCATT
ATGTATTGAACGTCAGCACCCAGAAGTGACCTATGAGCATTTCCTGCATGTGCTGTTAGAGAACCCACTTTCGGATGTGC
GTGTGATAGCTAAGCACGCTAACTTAGATGTGGAAACCGTAAAACAAGCCATCAGTGCAAGTTACGCTCGTGAGCAAGTG
TTAGATACCTATCCAGCATTCTCGCCACTGTTGGTTGAGCTATTGCAGGAAGCTTGGTTGCTTTCTACCACTGAGCTGAA
TCAGAATCAGCTTCGTTCAGGTGTGGTATTTTTAGCCGCATTGATGCGCGCTGATCGTTACCTACCACTTAAACTAATCC
GTCTTTTTGAACACATCAACAAAGAGAGCCTAAACAAAGGGTTTGATACGCTGTTGCAAGACTCTTCCGAGTCGGCGGTT
GAAAAAAGCAAAGCGGGTTCTCAAGCTCCTGCCGCGCTGGATGCAGCGTCATCTTCGCCACTGCATAAATACTGCACCAA
TGTCACGGCGCAAGCGCGTAACGGCGAACTGGACCCAGTATTGTGTCGTGAAAACGAACTCAATTTGATGATCGACATCT
TGTGTCGTCGTCGTAAAAACAACCCCATCGTTGTGGGAGACGCTGGTGTCGGTAAAAGCGCCATGATTGAAGGGCTTGCA
TTGCGCGTCGTTGCGGGCAATGTGCCGACACAGTTGCAAAATGTAGAGTTGTGTTCACTCGATCTAGGCTTGTTGCAAGC
GGGTGCTTCAGTCAAAGGTGAATTTGAAAAACGTCTTAAAGGCGTGATTGACGCGATCAAAACCTCGCCTAAACCGATCA
TTTTGTTTATCGATGAAGCGCACACTTTAATTGGTTCTGGCAACCAAGAGGGTGGTAGTGATGCGGCCAACTTGCTCAAG
CCAGCTCTTGCGCGAGGCGAGCTCAGTACTGTCGCAGCCACCACATGGAAAGAGTACAAAAAATATTTTGAAAAAGATCC
TGCGCTGACTCGTCGTTTCCAGTTAGTGAAATTAGAAGAGCCGAGCATCAGCCAAGCAGTAGATATTCTGCGTGGCTTGA
ATCGTGTTTACGAAAAAGCCCATAACGTATTGATTACTGATGATGCATTGAAAGCCGCCGCCGAGCTTTCAGCGCGTTAC
ATTTCAGGTAGACAACTGCCGGATAAAGCGATTGATGTGTTGGATACTGCTTGCGCGCGTATTGCAATTAATATCACCAC
ACCGCCGAAGCGCTTAGCGCAACTAGAGACCGCTTGCCATCAACGTCAACTTGAAATTGATATGCTTGAGCGTGCTCAAT
ATTTAGGTCAAGTGGTTGATTCGCATCGCTTGGATGAGCTATGTAGCCAAGAAGTGGCCGATGAAGCTGAAAAAGCGACC
TTGACTCAAAGCTGGCAAGAGCAAAAAGCGATTATTGAGCGCATTATTACCCTACGCGATCAGCTCTTAGATGGCGCTGA
GGATCATGGTGAGCAGACCCAAGTTGAGCGCGATGAGTTACTTGTTCAATTGCAGGAGCAATATCGAGCTTTAGAAGAGA
TCCCTCATAATGATCGCCTCATGCATCCACAAGTCGATGCTCAGCAAATCGCGGAAGTGATTGCGGACTGGACGGGTGTG
CCCGTTGACCAAATGAACAGCGATGAGCTGCATAAAATCACCCACCTAACGGCTATTTTAGGTGAGGCAATCAAAGGGCA
AGATACTGCGATTGAGCGTGTTCACCGTAACTTATTAACGGCGCGCGCGGATTTGCGCCGTCCGGGGCGTCCAAAAGGTT
CCTTCCTACTCGTGGGTCCAAGTGGCGTTGGTAAAACCGAAACGGTAGTCCAACTGGCGCAACAACTTTATGGTGGTAAA
CAATTTTTAACCACTATCAACATGTCGGAATATCAAGAAAAGCATACCGTTTCACGCCTGATTGGTTCGCCTCCGGGTTA
TGTTGGTTATGGTGAGGGTGGCATTCTTACCGAAGCGATTCGTAAAATGCCGTACTCTGTGGTGCTGTTAGATGAAGTTG
AAAAAGCGCACCCAGAAGTGCTCAATATTTTTTACCAAGCCTTTGATAAAGGTGAGCTGGCCGATGGTGAAGGTCGAGTG
ATCGACTGCCAAAACATCGTTTTCTTCCTCACCTCGAATTTAGGTTACCAAACCATAGTAGATTACGCGCAGCAGCCTCA
GTTGCTTGATGAGCAGCTTTACCCAGAACTTGCGGCTTTCTTCAAACCCGCCTTACTGGCTCGTATGGAGATTATTCCGT
ATCTACCGCTCAGCAAAGAAGTGCTAGAGCAGATTGTGCGTGGCAAGTTAACCCGCCTTGAGCAGCTCTTTAAACAGCGT
TATGCCGCTGACGTGGTGATTGAAGATAGCTTGATCGAAGAGATCTTAAGCCGTGCCACGCGCTCTGAAAATGGGGCTCG
TATGCTGGAAGCGATCATCGAAGGTCAATTACTACCACCTATTTCATTAGCTTTGTTAAATAAATTGGCTGATAAACAAC
CAGTGCAACGCATCTATTTAGCGGCGGAAGAGGGTGAGTTTATTGGAGAGGTTGAGTGA