Detailed information of component protein


Summary

Component ID T6CP014002
Component protein type TssA
T6SS ID (Type) T6SS01088 experimental (Type i1)
Strain Vibrio anguillarum strain MHK3
Replicon chromosome
Sequence Protein sequence (466 a.a.); Nucleotide sequence (1398 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CG015_RS14320
Coordinate (Strand) 247911..249308 (-)
NCBI ID WP_017046812.1
RefSeq NZ_CP022469
Uniprot ID A0A221WWS7_VIBAN
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 3.8e-72 214..460
ImpA_N PF06812.14 4.9e-25 12..125
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-465 MELTDYRRCITQPIQADNPVGERLIDDPLFDFVEDQMMKVGSLSHASVQWDEVEHSTLKLLSEKSKDLKLLIYLLQCLHNQVTPLRFTTSLQLLSDFMSLYWEDCFPAPGKRGSLPRRKFFSQIVQRLALVIDKLDFAQFDGPDRDELNTAIDALQQATTQAGLMSESVESLVAKVQAQLRRATEREQATQHVQETPAVERKTTTQSAISVDSSSDKATKQTLLKVAEFLSEQEFGIALAIRVRRFAVWSSITSLPEHDVSGETLLRAMAQERIKEYHDQMRSPDLALWRKVEQSLTMAPYWFEGQMMSYQIAQSLGQKAWSEAILSESQQFVARLPALLELKFKGGEPFVNASVKEWLLSQQQSSAQGQVAGDWQDKRKEAFSLAKEGGIAVALSMLNDGLVSASEPRDKFYWRLLSADLLNSNNLDAMAKEQYQTLHAQVSTMSVTDWEPSLVEQLEQYTTSE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9903 - -


  Protein sequence: 466 a.a.    

>T6CP014002 NZ_CP022469:c249308-247911 [Vibrio anguillarum] [TssA]
MELTDYRRCITQPIQADNPVGERLIDDPLFDFVEDQMMKVGSLSHASVQWDEVEHSTLKLLSEKSKDLKLLIYLLQCLHN
QVTPLRFTTSLQLLSDFMSLYWEDCFPAPGKRGSLPRRKFFSQIVQRLALVIDKLDFAQFDGPDRDELNTAIDALQQATT
QAGLMSESVESLVAKVQAQLRRATEREQATQHVQETPAVERKTTTQSAISVDSSSDKATKQTLLKVAEFLSEQEFGIALA
IRVRRFAVWSSITSLPEHDVSGETLLRAMAQERIKEYHDQMRSPDLALWRKVEQSLTMAPYWFEGQMMSYQIAQSLGQKA
WSEAILSESQQFVARLPALLELKFKGGEPFVNASVKEWLLSQQQSSAQGQVAGDWQDKRKEAFSLAKEGGIAVALSMLND
GLVSASEPRDKFYWRLLSADLLNSNNLDAMAKEQYQTLHAQVSTMSVTDWEPSLVEQLEQYTTSE*

  Nucleotide sequence: 1398 bp    

>T6CP014002 NZ_CP022469:c249308-247911 [Vibrio anguillarum] [TssA]
ATGGAGTTAACCGATTATCGCCGCTGTATTACTCAGCCTATTCAAGCCGATAACCCTGTGGGTGAGCGGCTGATTGATGA
TCCACTGTTTGATTTTGTTGAAGATCAAATGATGAAAGTGGGGTCACTCTCCCACGCTAGCGTGCAATGGGATGAAGTCG
AACACAGTACGCTCAAACTGCTCAGCGAAAAAAGTAAAGATCTCAAATTATTGATCTACCTGTTGCAGTGTCTGCATAAC
CAAGTCACACCGCTACGTTTCACTACGTCGCTGCAGCTGCTGAGCGATTTCATGTCCCTTTACTGGGAAGATTGCTTCCC
TGCGCCAGGTAAAAGAGGCAGTTTGCCACGTCGCAAATTCTTCAGCCAGATTGTGCAGCGGTTAGCCTTGGTGATCGACA
AGTTAGATTTCGCACAATTTGATGGACCAGATCGTGATGAGTTAAACACCGCGATCGACGCGCTACAGCAAGCGACTACT
CAAGCCGGACTGATGTCTGAAAGCGTTGAAAGTCTAGTGGCTAAAGTTCAAGCCCAACTGCGCCGTGCAACAGAACGTGA
GCAAGCGACTCAACATGTGCAAGAGACTCCGGCGGTTGAACGTAAAACCACCACCCAGAGCGCCATCTCAGTCGACAGTT
CAAGTGACAAAGCCACTAAGCAGACCTTACTAAAGGTAGCTGAGTTTTTGTCTGAACAAGAGTTCGGCATTGCCTTGGCA
ATACGAGTCAGGCGTTTTGCCGTGTGGTCAAGTATTACCTCATTACCTGAGCACGACGTCAGCGGTGAAACACTGTTACG
GGCGATGGCGCAAGAACGAATCAAAGAGTATCACGACCAAATGCGTAGCCCAGATTTAGCCTTATGGCGCAAGGTAGAGC
AGAGTTTGACCATGGCACCTTACTGGTTTGAAGGGCAGATGATGAGCTATCAAATCGCGCAAAGCTTAGGCCAAAAGGCG
TGGAGTGAAGCCATTTTGAGTGAAAGCCAGCAGTTTGTGGCACGTCTACCTGCGCTGCTCGAGTTGAAATTCAAAGGAGG
CGAGCCTTTTGTCAATGCGAGCGTAAAAGAGTGGCTACTCAGCCAGCAGCAAAGTAGCGCCCAAGGCCAAGTAGCAGGTG
ATTGGCAAGACAAACGCAAAGAGGCGTTTAGCTTAGCGAAAGAGGGAGGCATTGCGGTGGCGCTCTCTATGCTCAACGAT
GGTCTGGTCAGCGCCAGTGAGCCAAGGGATAAATTCTATTGGCGGTTATTATCGGCTGATTTGTTAAATAGCAATAATTT
AGATGCGATGGCGAAAGAACAGTACCAAACGTTACATGCTCAGGTTAGCACCATGAGCGTTACCGATTGGGAACCCTCAT
TAGTTGAGCAATTAGAACAATACACAACGTCAGAGTAA