Detailed information of component protein


Summary

Component ID T6CP014001
Component protein type TssM
T6SS ID (Type) T6SS01088 experimental (Type i1)
Strain Vibrio anguillarum strain MHK3
Replicon chromosome
Sequence Protein sequence (1167 a.a.); Nucleotide sequence (3501 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CG015_RS14315
Coordinate (Strand) 244348..247848 (-)
NCBI ID WP_026028432.1
RefSeq NZ_CP022469
Uniprot ID UPI000474C53C
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 7.9e-76 188..445
IcmF-related PF06761.14 1.7e-71 497..809
IcmF_C PF06744.14 2.5e-23 1039..1145
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 IAAAMP
Transmembrane helix 7-24 ILLFSTFILLNVAIWWAG
Outside 25-36 PWLEIAGNKPLE
Transmembrane helix 37-59 SITARAVASSLFTLGALAVWGVW
Inside 60-437 QWRKLQGFKAEQKREDQLRQDPIKAYEERQEVELNQVMVSMKENLNKRNYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWIGDESVLIDPDGELLTQGNHSNDNDGAMERRLWLHFVNWLERTRSRRPLNGIVLALDVSHLATATATERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYSRSQREDVLGFTFSLDSIDDLDNWLNEFSKDYSQFVERINDVLPHAVSVPMDLEERNAIYSFTRQISGLKEILLQFFNDALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLDHAINKAQQAKNSTVYFTQKLFNNIIYPEAGLASDNFRVAKQKRR
Transmembrane helix 438-457 LIGLSVVACSIATVLLVGTW
Outside 458-1166 HRYYLSNVKHSDAVLAKVNEYKNEFPSNLYLASQQDVLVPLNKIREATLEFGFFRDKPQYISDFGLYQGHTIGPMVEATYLNLLENRFLPLLMADVVVQLNQAKTDEEKLAVLRVYRMMVDKSGRYKDYVLDYFSKYWQQEFAGQRVIQEELLGHLDYAMLHTDLAGDRARGDRNAESVMKPYDQVVAKVQSDLGSMPNDQRVYRNLKLNAQTVLGPSINLRNLIGPVFDVVFEERVVNSSSLYIPQMLTKKGFEDYFMPQSESVSELALIDSWVLGQSKSAQFSEADKHDLRNKIRSLYVADYTNTWRAALNEISVKYFSDINDAVSVLENFTGNIEPMQRLLRTLESNTQMYASVPKDEAAQKELLKNPKYKVASQIDAPFAELNAMLKPVGDKPAYINEVLVAVEELQNYLKSIQEAPDVGMAALDATKARVKLVNADPIYTVKRIASGLPKPLDTMVSKLADESWYVVKQEAIKHLEVRWHDDVYKTFEEKLAGRYPFNESSNKDSSLSDFEAFFAPNGTLDNFYNNQLRMFVEENIAVNDDDNAQSIIRKDVLEQLKQAKKIQQAFFNRKGVLDVSFSVEPLRLSNNKRRSVLNVDGQYLAYSHGPRDSVELIWPNTLRDSAISKVTLVPTKNNMSPRSINIQGPWAFFRLLEQGDVVGASSTSVDFKFAVDGGEMIYRLNSEADINPFTERLFKSFKLSKTLY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9967 - -


  Protein sequence: 1167 a.a.    

>T6CP014001 NZ_CP022469:c247848-244348 [Vibrio anguillarum] [TssM]
IAAAMPILLFSTFILLNVAIWWAGPWLEIAGNKPLESITARAVASSLFTLGALAVWGVWQWRKLQGFKAEQKREDQLRQD
PIKAYEERQEVELNQVMVSMKENLNKRNYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWI
GDESVLIDPDGELLTQGNHSNDNDGAMERRLWLHFVNWLERTRSRRPLNGIVLALDVSHLATATATERKAYANLLRARLR
ELMETLSTRLPVYIALTKLDLLHGFEPFFKHYSRSQREDVLGFTFSLDSIDDLDNWLNEFSKDYSQFVERINDVLPHAVS
VPMDLEERNAIYSFTRQISGLKEILLQFFNDALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLDHAINKAQ
QAKNSTVYFTQKLFNNIIYPEAGLASDNFRVAKQKRRLIGLSVVACSIATVLLVGTWHRYYLSNVKHSDAVLAKVNEYKN
EFPSNLYLASQQDVLVPLNKIREATLEFGFFRDKPQYISDFGLYQGHTIGPMVEATYLNLLENRFLPLLMADVVVQLNQA
KTDEEKLAVLRVYRMMVDKSGRYKDYVLDYFSKYWQQEFAGQRVIQEELLGHLDYAMLHTDLAGDRARGDRNAESVMKPY
DQVVAKVQSDLGSMPNDQRVYRNLKLNAQTVLGPSINLRNLIGPVFDVVFEERVVNSSSLYIPQMLTKKGFEDYFMPQSE
SVSELALIDSWVLGQSKSAQFSEADKHDLRNKIRSLYVADYTNTWRAALNEISVKYFSDINDAVSVLENFTGNIEPMQRL
LRTLESNTQMYASVPKDEAAQKELLKNPKYKVASQIDAPFAELNAMLKPVGDKPAYINEVLVAVEELQNYLKSIQEAPDV
GMAALDATKARVKLVNADPIYTVKRIASGLPKPLDTMVSKLADESWYVVKQEAIKHLEVRWHDDVYKTFEEKLAGRYPFN
ESSNKDSSLSDFEAFFAPNGTLDNFYNNQLRMFVEENIAVNDDDNAQSIIRKDVLEQLKQAKKIQQAFFNRKGVLDVSFS
VEPLRLSNNKRRSVLNVDGQYLAYSHGPRDSVELIWPNTLRDSAISKVTLVPTKNNMSPRSINIQGPWAFFRLLEQGDVV
GASSTSVDFKFAVDGGEMIYRLNSEADINPFTERLFKSFKLSKTLY*

  Nucleotide sequence: 3501 bp    

>T6CP014001 NZ_CP022469:c247848-244348 [Vibrio anguillarum] [TssM]
ATTGCCGCGGCGATGCCTATTTTGCTATTTAGCACATTCATTCTATTGAATGTTGCGATTTGGTGGGCAGGCCCTTGGCT
AGAGATCGCGGGTAATAAGCCACTTGAATCGATAACCGCTCGCGCAGTGGCAAGTAGCTTGTTCACTTTAGGTGCATTGG
CCGTTTGGGGTGTTTGGCAGTGGCGAAAATTGCAAGGTTTTAAAGCCGAGCAAAAGCGTGAAGATCAGCTTCGCCAAGAT
CCAATTAAAGCCTATGAAGAGCGCCAAGAGGTTGAGCTGAACCAAGTGATGGTCAGCATGAAAGAGAACCTCAATAAACG
TAATTATCTTTATGCGTTGCCATGGTATTTAGTGCTCGGTTTGGAAAATGCCGGTAAAACCAGCCTCATCAACCGCTCTG
GGCAAAACTTTGTTTTTTCTTCGGTAATGCGAGCCTCGGGTCAAAAAAGTGAAAACCCGTATTCGTTTGATTGGTGGATT
GGCGATGAATCGGTATTGATTGATCCAGATGGAGAGCTACTGACACAAGGTAACCATAGCAATGATAACGATGGTGCGAT
GGAGCGCCGTTTGTGGCTTCATTTTGTTAATTGGTTGGAGAGAACGCGTAGCCGTCGTCCACTCAACGGTATTGTTTTAG
CGTTAGACGTTTCTCACTTAGCAACCGCAACTGCAACCGAGCGTAAAGCTTACGCCAATTTATTACGTGCTCGCTTACGT
GAACTGATGGAGACGTTATCCACGCGTCTACCTGTCTATATTGCATTGACGAAATTGGATTTATTACACGGTTTTGAACC
TTTCTTTAAACATTACTCGCGCAGTCAGCGTGAAGATGTGCTGGGCTTTACCTTTTCGCTTGACTCTATTGATGACTTAG
ATAATTGGCTCAACGAGTTTTCAAAAGACTACAGTCAGTTTGTTGAGCGCATTAATGATGTACTGCCGCATGCGGTTTCT
GTACCTATGGATCTCGAAGAGCGCAATGCTATTTATAGTTTCACGCGTCAAATTTCTGGTTTAAAAGAGATCTTATTACA
ATTTTTCAACGATGCATTGGCCAGTGATCAGTTCTCTACTTCGGCTTTGGTGCGTGGCGCGTATTTCACTTCTGTGTATC
AACAGGGCGTACCCACAAACGCATTTGATGATGCTGCTTCGCGTCGTTATGGGCTAGATCATGCCATTAATAAAGCACAG
CAAGCCAAAAACTCAACGGTTTATTTCACACAAAAACTGTTTAATAACATCATCTATCCTGAAGCTGGGCTTGCCTCAGA
TAATTTTCGTGTTGCGAAGCAAAAACGGCGCTTGATTGGTTTGTCAGTAGTGGCTTGTTCTATTGCAACTGTGTTATTAG
TCGGCACTTGGCATCGTTATTACCTTAGTAACGTGAAGCATTCTGATGCGGTGTTAGCGAAAGTAAACGAGTACAAAAAC
GAGTTCCCCTCTAATCTTTATTTAGCCTCTCAGCAAGATGTTCTCGTGCCGCTCAATAAAATTCGAGAGGCGACATTGGA
GTTTGGCTTCTTCCGTGATAAACCACAGTACATTTCCGATTTTGGTTTGTACCAAGGCCACACGATTGGTCCAATGGTTG
AAGCGACCTATTTGAATTTATTGGAAAACCGCTTTTTACCTCTACTAATGGCTGATGTCGTTGTGCAGCTTAACCAAGCC
AAAACAGATGAAGAGAAACTGGCCGTGCTGCGTGTTTATCGCATGATGGTAGATAAAAGCGGCCGCTATAAGGATTATGT
ACTCGATTATTTCTCCAAATACTGGCAGCAAGAGTTCGCTGGGCAACGCGTGATCCAAGAAGAACTACTGGGGCATTTAG
ACTACGCCATGTTACACACGGATTTAGCGGGTGATCGCGCTCGCGGTGATCGCAATGCAGAGTCGGTGATGAAGCCTTAT
GATCAGGTGGTGGCGAAAGTGCAGTCTGATCTTGGTTCTATGCCTAACGATCAACGTGTTTACCGTAATTTGAAGTTGAA
TGCACAAACGGTTCTTGGCCCCTCGATCAATTTACGCAACTTGATTGGCCCCGTCTTTGATGTGGTTTTTGAAGAGCGAG
TGGTCAACAGCAGCTCGCTGTATATTCCGCAAATGCTCACCAAAAAAGGGTTTGAAGATTACTTCATGCCGCAATCAGAA
TCCGTTTCTGAGCTGGCCTTGATCGACAGTTGGGTACTAGGGCAATCCAAATCGGCTCAATTTAGCGAAGCGGATAAGCA
TGACCTTCGTAACAAAATCCGCAGCTTGTATGTGGCGGACTACACCAATACCTGGCGTGCGGCTCTTAATGAAATCAGCG
TTAAGTATTTTAGCGACATCAATGACGCGGTGTCAGTATTAGAAAACTTTACTGGCAACATTGAACCGATGCAGCGTTTG
CTTCGCACTTTAGAAAGCAATACTCAAATGTATGCCAGTGTGCCTAAAGATGAAGCCGCGCAAAAAGAGCTGTTAAAAAA
TCCAAAATACAAAGTTGCTTCGCAGATTGATGCGCCCTTTGCTGAACTAAACGCTATGCTCAAGCCAGTCGGTGATAAGC
CAGCGTACATCAATGAAGTATTAGTGGCGGTGGAAGAGTTACAAAATTACCTCAAATCTATTCAAGAAGCGCCAGATGTT
GGTATGGCTGCGCTGGATGCCACCAAAGCACGCGTAAAATTAGTGAACGCTGATCCAATTTACACGGTGAAACGTATTGC
ATCAGGTTTGCCTAAACCGCTCGATACAATGGTGTCTAAACTGGCGGATGAGAGTTGGTATGTTGTCAAACAAGAAGCGA
TTAAGCACCTTGAAGTTCGTTGGCATGATGATGTTTACAAAACCTTTGAAGAGAAATTGGCTGGGCGCTATCCATTTAAT
GAGTCTTCCAACAAAGACAGTTCTCTTTCTGATTTTGAAGCATTTTTTGCGCCCAACGGCACATTAGACAACTTCTACAA
CAACCAGCTAAGAATGTTTGTGGAAGAAAATATTGCGGTCAATGATGACGATAACGCGCAGTCGATTATTCGCAAAGACG
TTCTAGAACAGCTCAAGCAGGCGAAGAAAATTCAGCAAGCTTTCTTTAACCGCAAAGGGGTCTTAGACGTTAGTTTCTCG
GTTGAACCGCTACGCTTGAGCAACAACAAACGCCGCAGTGTGCTGAATGTTGACGGTCAATATCTCGCTTATAGTCACGG
CCCAAGAGACAGTGTCGAGTTGATTTGGCCAAATACGCTGCGTGATTCTGCGATCTCTAAAGTAACGTTAGTGCCGACTA
AAAATAATATGTCGCCACGAAGTATTAATATCCAAGGTCCGTGGGCATTTTTCCGCTTGCTTGAACAAGGTGATGTGGTG
GGTGCTAGTTCCACGTCGGTTGACTTTAAGTTTGCAGTTGACGGTGGTGAGATGATTTATCGACTCAATTCAGAGGCAGA
TATTAACCCATTCACCGAGCGGTTATTTAAGTCATTCAAACTCTCGAAAACCCTTTACTAA