Detailed information of component protein


Summary

Component ID T6CP013734
Component protein type TssC
T6SS ID (Type) T6SS01063 experimental (Type i3)
Strain Bradyrhizobium japonicum strain J5
Replicon chromosome
Sequence Protein sequence (501 a.a.); Nucleotide sequence (1503 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BKD09_RS17240
Coordinate (Strand) 3560504..3562006 (-)
NCBI ID WP_071911365.1
RefSeq NZ_CP017637
Uniprot ID A0A7Z0Q7A8_9BRAD, A0A1L3F9W4_BRAJP
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.6e-129 69..370
VipB_2 PF18945.2 1.2e-40 384..495
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-500 MAKEAVHKESTTQVKTVEADEFATLLKQSFKPRTERAATEVDNAVSTLVQEALKDSSVIKSDVLDTIEEMIARIDQKLTAQMNEIIHAPEFQAIESTWRGLHYLVFNSETDANLKIRVMNVSKTELYRNLRLYPDARWDQSPLFKQIYEYEFGQLGGEPFGCLIGDYYFSHLPTDVQLLRDLSKIAGAAHAPFFSGAEPTLMGMDSWTELSNPRDIGKVFDTPEYAAWKGLRDQDDSRYLGLCMPRALGRLPYGAKSEPVEEFAFEEETDGHTGDKYGWINAAYAMAVNINRAFKEFGWCTRIRGVQSGGEVINLPTHTFPTDDGGVDLKCPTEIAISDRREHELAKAGLIPLIHRKNTDKAAFIGAQSLYKPKKYFGEKGVDATASDNLSSRLPYMFAVSRFAHYLKCMVRDKIGSMKEKDELTVWLQTWINEYVDANPALSSEAQKARKPLAAAKVEVIANEENPGYYNARFFLRPHFQLEAMDVGLSLVSRLPGPSS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9957 - -


  Protein sequence: 501 a.a.    

>T6CP013734 NZ_CP017637:c3562006-3560504 [Bradyrhizobium japonicum] [TssC]
MAKEAVHKESTTQVKTVEADEFATLLKQSFKPRTERAATEVDNAVSTLVQEALKDSSVIKSDVLDTIEEMIARIDQKLTA
QMNEIIHAPEFQAIESTWRGLHYLVFNSETDANLKIRVMNVSKTELYRNLRLYPDARWDQSPLFKQIYEYEFGQLGGEPF
GCLIGDYYFSHLPTDVQLLRDLSKIAGAAHAPFFSGAEPTLMGMDSWTELSNPRDIGKVFDTPEYAAWKGLRDQDDSRYL
GLCMPRALGRLPYGAKSEPVEEFAFEEETDGHTGDKYGWINAAYAMAVNINRAFKEFGWCTRIRGVQSGGEVINLPTHTF
PTDDGGVDLKCPTEIAISDRREHELAKAGLIPLIHRKNTDKAAFIGAQSLYKPKKYFGEKGVDATASDNLSSRLPYMFAV
SRFAHYLKCMVRDKIGSMKEKDELTVWLQTWINEYVDANPALSSEAQKARKPLAAAKVEVIANEENPGYYNARFFLRPHF
QLEAMDVGLSLVSRLPGPSS*

  Nucleotide sequence: 1503 bp    

>T6CP013734 NZ_CP017637:c3562006-3560504 [Bradyrhizobium japonicum] [TssC]
ATGGCAAAAGAAGCTGTTCACAAAGAGAGCACCACCCAGGTCAAGACCGTCGAAGCTGACGAGTTTGCCACTCTGCTGAA
GCAAAGCTTCAAACCGCGCACCGAACGCGCAGCGACCGAGGTCGACAACGCGGTATCCACGCTCGTTCAAGAGGCATTGA
AAGACTCGAGCGTCATCAAGTCGGACGTGCTCGACACGATCGAGGAGATGATCGCGCGGATCGACCAGAAGCTGACCGCG
CAGATGAACGAGATCATTCACGCACCCGAATTCCAGGCGATCGAAAGTACCTGGCGGGGCCTCCACTACCTCGTCTTCAA
CTCGGAGACCGACGCCAACCTCAAGATCCGGGTCATGAACGTCTCGAAGACCGAGCTGTATCGTAATCTGCGGCTTTACC
CCGATGCGCGCTGGGACCAGAGCCCATTGTTCAAGCAGATCTACGAATACGAGTTCGGCCAGTTGGGCGGCGAGCCGTTC
GGCTGCCTTATCGGCGACTACTATTTCAGCCACCTCCCCACCGACGTGCAGTTGCTGCGCGATCTCAGCAAGATCGCCGG
TGCCGCACACGCCCCCTTCTTCAGCGGCGCCGAGCCGACGCTGATGGGAATGGACTCGTGGACCGAATTGTCCAACCCTC
GTGATATCGGCAAGGTGTTCGACACGCCGGAATATGCCGCATGGAAGGGACTGCGCGACCAGGACGACTCGCGTTATCTC
GGCCTGTGCATGCCGCGTGCGCTGGGTCGCCTCCCCTACGGCGCGAAATCGGAGCCCGTGGAGGAGTTCGCCTTCGAGGA
GGAGACAGACGGGCACACCGGCGACAAATACGGCTGGATCAACGCCGCCTATGCGATGGCGGTCAACATCAACCGCGCCT
TCAAGGAGTTCGGCTGGTGCACGCGCATCCGCGGTGTGCAATCCGGCGGCGAGGTGATCAATCTGCCGACGCACACATTC
CCGACCGACGACGGTGGCGTCGATCTGAAATGCCCGACCGAGATCGCCATCAGCGATCGCCGCGAGCACGAACTTGCAAA
GGCGGGCCTCATCCCGCTGATCCATCGCAAGAACACCGACAAGGCCGCCTTCATCGGCGCCCAGTCGCTTTACAAGCCGA
AGAAGTATTTCGGCGAGAAGGGCGTGGATGCAACCGCGTCCGACAACCTGTCGTCACGTCTGCCCTACATGTTCGCAGTG
TCTCGCTTTGCGCACTATCTGAAGTGCATGGTTCGCGACAAGATCGGATCCATGAAGGAGAAGGATGAGCTGACGGTCTG
GCTGCAAACCTGGATCAACGAGTACGTTGATGCCAACCCAGCCCTATCGTCAGAAGCTCAGAAAGCGCGCAAGCCGCTGG
CCGCTGCGAAGGTAGAGGTCATAGCAAACGAGGAGAACCCGGGATATTACAACGCGCGCTTCTTTCTTCGTCCGCACTTT
CAATTGGAAGCGATGGATGTCGGCCTCAGTCTGGTTTCACGCCTGCCAGGTCCCAGCTCCTGA