Detailed information of component protein


Summary

Component ID T6CP013732
Component protein type TssE
T6SS ID (Type) T6SS01063 experimental (Type i3)
Strain Bradyrhizobium japonicum strain J5
Replicon chromosome
Sequence Protein sequence (183 a.a.); Nucleotide sequence (549 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BKD09_RS17225
Coordinate (Strand) 3559240..3559788 (-)
NCBI ID WP_155795011.1
RefSeq NZ_CP017637
Uniprot ID UPI0012DB5EEB
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 2.1e-17 58..159

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-182 MTIAPKKDRLSPPLMLAFRSAHEARDARKKLNLRDESGERVIAGRRSAGRFPISETLLRREVSHDLETLLNTIALESTLDLNGHDCVRTSILNFGFPDIAHRSIDEVADDELTDALRETLTTYEPRLDRNTIRVRRDGSVGPEQLKLRFIVHADLKAEPLNVPVEFVADVDLDSGDIQINRL



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9816 - -



  Protein sequence: 183 a.a.    

>T6CP013732 NZ_CP017637:c3559788-3559240 [Bradyrhizobium japonicum] [TssE]
MTIAPKKDRLSPPLMLAFRSAHEARDARKKLNLRDESGERVIAGRRSAGRFPISETLLRREVSHDLETLLNTIALESTLD
LNGHDCVRTSILNFGFPDIAHRSIDEVADDELTDALRETLTTYEPRLDRNTIRVRRDGSVGPEQLKLRFIVHADLKAEPL
NVPVEFVADVDLDSGDIQINRL*

  Nucleotide sequence: 549 bp    

>T6CP013732 NZ_CP017637:c3559788-3559240 [Bradyrhizobium japonicum] [TssE]
ATGACCATTGCACCAAAGAAGGATCGGCTCTCTCCCCCACTGATGCTGGCATTTCGCTCAGCCCATGAAGCGCGCGACGC
ACGCAAGAAGCTCAATCTACGCGATGAGTCTGGCGAGCGGGTCATTGCAGGGCGGCGGAGCGCGGGCCGATTTCCAATCT
CGGAAACGTTGCTCCGGCGCGAGGTCTCCCATGACCTCGAAACGCTCCTCAACACCATTGCCCTGGAATCGACCCTGGAT
CTGAACGGCCACGATTGCGTCCGAACCTCAATCCTGAACTTTGGCTTCCCTGATATTGCCCACCGTTCGATCGACGAGGT
CGCCGACGACGAGCTCACCGACGCGTTGCGCGAGACGCTCACGACTTATGAACCGAGGCTCGATCGCAACACCATCCGGG
TCCGACGCGACGGCTCGGTCGGCCCCGAGCAACTCAAGCTGCGCTTCATCGTTCACGCCGACCTGAAGGCCGAGCCGCTC
AACGTCCCCGTGGAGTTCGTCGCCGACGTCGACCTCGACAGCGGCGATATCCAGATCAACCGACTTTAG