Detailed information of component protein


Summary

Component ID T6CP013730
Component protein type TssG
T6SS ID (Type) T6SS01063 experimental (Type i3)
Strain Bradyrhizobium japonicum strain J5
Replicon chromosome
Sequence Protein sequence (355 a.a.); Nucleotide sequence (1065 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BKD09_RS17215
Coordinate (Strand) 3556243..3557307 (-)
NCBI ID WP_071911361.1
RefSeq NZ_CP017637
Uniprot ID A0A1L3F9W6_BRAJP
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2.3e-89 21..319
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-354 MAAAHGHAETSMTLIDQMKAEPWRFDFFNTLRQLERANSDRPRIGDSAARREEYIDLGQVPYLEFPASNLAAVDDVGGRLRIFVKFLGLLGPQGALPLATTDESLSWWLMRDDAFPRFLDLLNGRFLQLFFRAWADARPIAQHDRPADDRFIAYVGSFAGLGSDVFADRDTVPDMAKLSFAGLISPRAKCASRLTRFLQGLFDVKVEIDEFVGTWLSFDPSHCSRLGGTHARLGRDALLGSRVFSVEDKIRVRVFVKNFTQYEQFLPTESRNLSEPLADAVFFYIGDELEWEVELAIPAGEVVPVRLGQSGRLGWTTWVSPNWTSTEEYRRDARFQLGERLSARRAAAADAPAI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9871 - -


  Protein sequence: 355 a.a.    

>T6CP013730 NZ_CP017637:c3557307-3556243 [Bradyrhizobium japonicum] [TssG]
MAAAHGHAETSMTLIDQMKAEPWRFDFFNTLRQLERANSDRPRIGDSAARREEYIDLGQVPYLEFPASNLAAVDDVGGRL
RIFVKFLGLLGPQGALPLATTDESLSWWLMRDDAFPRFLDLLNGRFLQLFFRAWADARPIAQHDRPADDRFIAYVGSFAG
LGSDVFADRDTVPDMAKLSFAGLISPRAKCASRLTRFLQGLFDVKVEIDEFVGTWLSFDPSHCSRLGGTHARLGRDALLG
SRVFSVEDKIRVRVFVKNFTQYEQFLPTESRNLSEPLADAVFFYIGDELEWEVELAIPAGEVVPVRLGQSGRLGWTTWVS
PNWTSTEEYRRDARFQLGERLSARRAAAADAPAI*

  Nucleotide sequence: 1065 bp    

>T6CP013730 NZ_CP017637:c3557307-3556243 [Bradyrhizobium japonicum] [TssG]
TTGGCCGCCGCGCATGGGCACGCGGAGACCTCTATGACGCTGATCGACCAGATGAAGGCGGAGCCCTGGCGGTTCGATTT
CTTCAATACGCTGCGCCAGCTCGAGCGCGCCAACTCGGATCGACCGCGGATCGGTGACAGTGCTGCACGCCGCGAGGAGT
ATATCGACCTCGGCCAAGTGCCTTATCTGGAGTTCCCCGCCTCCAACCTTGCGGCCGTCGACGACGTGGGTGGCCGGCTC
AGGATATTCGTCAAATTTCTCGGTCTCCTGGGGCCGCAGGGCGCGCTGCCGCTTGCCACCACCGACGAAAGCCTCAGCTG
GTGGCTGATGCGGGATGACGCCTTCCCGCGCTTTCTCGATCTGCTCAACGGACGCTTCCTGCAACTCTTCTTTCGCGCCT
GGGCCGATGCGCGGCCGATCGCTCAGCACGACCGTCCGGCGGATGATCGCTTCATCGCCTATGTCGGCTCCTTCGCCGGC
CTCGGCTCCGACGTTTTCGCCGATCGAGACACCGTACCGGACATGGCGAAGCTCAGCTTTGCCGGACTGATCTCCCCCAG
AGCGAAGTGTGCGTCACGGTTGACGCGGTTCCTGCAGGGGCTGTTCGACGTCAAGGTCGAAATCGACGAATTTGTCGGCA
CCTGGCTGTCATTCGACCCAAGTCATTGCAGCCGGCTCGGCGGAACCCATGCCAGGCTCGGCCGGGACGCGCTTCTGGGC
TCACGCGTATTCAGCGTCGAGGACAAGATCAGGGTGCGAGTCTTTGTCAAGAATTTCACCCAGTACGAGCAGTTCTTGCC
GACCGAATCGCGCAACTTGTCGGAGCCTCTGGCGGACGCCGTGTTCTTCTATATCGGCGACGAGTTGGAATGGGAGGTGG
AGCTCGCCATTCCGGCGGGAGAGGTCGTCCCGGTCAGGCTCGGACAGAGCGGACGACTTGGATGGACCACCTGGGTTTCG
CCGAATTGGACTTCCACGGAAGAATATCGCCGCGATGCCCGCTTTCAGCTCGGCGAGCGCTTGAGCGCCCGTCGAGCCGC
CGCAGCCGATGCCCCGGCGATTTGA