Detailed information of component protein


Summary

Component ID T6CP013729
Component protein type TssH
T6SS ID (Type) T6SS01063 experimental (Type i3)
Strain Bradyrhizobium japonicum strain J5
Replicon chromosome
Sequence Protein sequence (880 a.a.); Nucleotide sequence (2640 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BKD09_RS17210
Coordinate (Strand) 3553506..3556145 (-)
NCBI ID WP_071911359.1
RefSeq NZ_CP017637
Uniprot ID A0A1L3F9U6_BRAJP
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.4e-41 611..777
AAA_lid_9 PF17871.3 4.2e-28 371..462
ClpB_D2-small PF10431.11 6e-16 784..860
AAA PF00004.31 9.4e-09 231..329
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-879 VTDISIEAVTGKLNRAGYDAFIQALRHAKSAGNRNVELAHWLFHILQQERNDLSLSVDHYKLDRARLLSDLAGVINGFRKNETDMPGVANPVIDLLDRGWHYATLFFGETQIRTGHLLVAGLKSNDIRRTLNNLSQEFAKVNVDALAAERRNVWAGSDEETMRPMDGSGLVGAGTEGAAQAGPKGTTPLDRFSQDLTAKAKSGEMDPILGRDEEIRQLIDVLMRRRQNNPILTGEAGVGKTAVVEGFAQRIAAGDVPPPLRGVRLCALDIGLMQAGASMKGEFEQRLRSVIDEVQSSPTPIILFIDEAHTLIGAGGAAGTGDAANLLKPPLARGTLRTIAATTWAEYRQYIEKDPALTRRFQPIQIDEPEVETCCIMLRGLLGPMEKHHGVRISDAAIVAAVNLSHRYIPSRQLPDKAVSLLDTASARVAISQSATPALIEDARVAITAREAEKSALVSDSDLGLKDSDRITAIDNDIAALKDKLTNLEADWAAEQELVKDIRSIREILSQPKEGEDPAVRRAELRGKFDTLESIHPEKRMVYAHVDQQSVASVVSDWTGIPVGRMMRDEIETVLKLPEILNRRVVGQSHGLTMIAKRIETSRAKLDNPSKPIGVFMLAGPSGVGKTETALALAETLYGGEQNMITINMSEFQEAHTVSTLKGAPPGYVGYGEGGRLTEAVRRKPYSVILLDEVEKAHPDVHEIFFQVFDKGTMEDGNGRRIDFKNTLIILTTNVGTDLIMGLSRDPKYRNEPEELAKMLRPELLKVFPAALLGRIVSIPYFPLSDEMLAGIVRLQLDRIGRRLRDNHNASFDYDDAVVEHIVSRCNDPDSGGRMIDNIITNTLLPELSRAFLSKSLAKEEIKQARVSIENDKFAYSWN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9960 - -


  Protein sequence: 880 a.a.    

>T6CP013729 NZ_CP017637:c3556145-3553506 [Bradyrhizobium japonicum] [TssH]
VTDISIEAVTGKLNRAGYDAFIQALRHAKSAGNRNVELAHWLFHILQQERNDLSLSVDHYKLDRARLLSDLAGVINGFRK
NETDMPGVANPVIDLLDRGWHYATLFFGETQIRTGHLLVAGLKSNDIRRTLNNLSQEFAKVNVDALAAERRNVWAGSDEE
TMRPMDGSGLVGAGTEGAAQAGPKGTTPLDRFSQDLTAKAKSGEMDPILGRDEEIRQLIDVLMRRRQNNPILTGEAGVGK
TAVVEGFAQRIAAGDVPPPLRGVRLCALDIGLMQAGASMKGEFEQRLRSVIDEVQSSPTPIILFIDEAHTLIGAGGAAGT
GDAANLLKPPLARGTLRTIAATTWAEYRQYIEKDPALTRRFQPIQIDEPEVETCCIMLRGLLGPMEKHHGVRISDAAIVA
AVNLSHRYIPSRQLPDKAVSLLDTASARVAISQSATPALIEDARVAITAREAEKSALVSDSDLGLKDSDRITAIDNDIAA
LKDKLTNLEADWAAEQELVKDIRSIREILSQPKEGEDPAVRRAELRGKFDTLESIHPEKRMVYAHVDQQSVASVVSDWTG
IPVGRMMRDEIETVLKLPEILNRRVVGQSHGLTMIAKRIETSRAKLDNPSKPIGVFMLAGPSGVGKTETALALAETLYGG
EQNMITINMSEFQEAHTVSTLKGAPPGYVGYGEGGRLTEAVRRKPYSVILLDEVEKAHPDVHEIFFQVFDKGTMEDGNGR
RIDFKNTLIILTTNVGTDLIMGLSRDPKYRNEPEELAKMLRPELLKVFPAALLGRIVSIPYFPLSDEMLAGIVRLQLDRI
GRRLRDNHNASFDYDDAVVEHIVSRCNDPDSGGRMIDNIITNTLLPELSRAFLSKSLAKEEIKQARVSIENDKFAYSWN*

  Nucleotide sequence: 2640 bp    

>T6CP013729 NZ_CP017637:c3556145-3553506 [Bradyrhizobium japonicum] [TssH]
GTGACCGACATCAGCATTGAGGCTGTAACGGGCAAGCTGAACCGGGCGGGCTATGATGCCTTCATACAGGCCCTGCGCCA
CGCGAAGAGCGCCGGCAATCGCAACGTCGAGCTAGCGCACTGGCTGTTTCATATCCTGCAGCAGGAACGCAACGATCTCA
GCCTCTCGGTCGATCATTACAAGCTCGACCGGGCACGCTTGTTGTCGGACCTTGCCGGCGTGATCAATGGCTTTCGTAAG
AACGAAACCGACATGCCGGGCGTCGCCAATCCGGTCATCGATCTGCTCGATCGGGGCTGGCATTATGCCACGCTGTTCTT
TGGCGAGACCCAGATCCGCACCGGTCACCTGCTCGTGGCGGGCCTGAAATCGAACGATATTCGTCGCACGCTGAACAACC
TCTCGCAGGAATTCGCCAAGGTCAACGTCGACGCACTCGCCGCGGAGCGCCGCAATGTCTGGGCCGGATCCGACGAGGAG
ACCATGCGGCCGATGGACGGTTCGGGCCTGGTCGGCGCAGGCACGGAAGGCGCGGCCCAAGCGGGTCCCAAGGGGACGAC
GCCGCTCGACCGGTTCTCCCAGGATCTCACCGCCAAGGCCAAATCAGGTGAGATGGATCCGATCCTTGGCCGGGACGAAG
AAATCCGCCAACTGATCGACGTGCTGATGCGACGGCGGCAGAACAATCCAATTCTTACCGGCGAGGCTGGCGTCGGCAAG
ACCGCAGTTGTCGAGGGATTCGCCCAGCGAATCGCCGCCGGCGACGTGCCGCCACCGCTCCGCGGTGTAAGGCTTTGTGC
GCTCGACATCGGCCTGATGCAGGCCGGTGCTTCCATGAAGGGTGAGTTTGAACAGCGCTTGCGCTCGGTGATCGACGAGG
TCCAGAGCTCCCCCACCCCCATCATCCTGTTCATCGATGAAGCCCACACATTGATCGGCGCCGGCGGCGCGGCCGGCACC
GGTGATGCGGCCAATCTCCTGAAACCTCCTCTCGCCCGTGGCACGCTGCGCACGATCGCCGCCACCACATGGGCAGAATA
TCGCCAGTATATCGAGAAAGACCCCGCGCTCACACGACGCTTCCAGCCGATCCAGATCGATGAACCGGAAGTGGAGACCT
GCTGCATCATGCTGCGCGGACTTCTCGGTCCGATGGAAAAGCACCACGGCGTTCGCATCTCCGATGCTGCGATCGTCGCG
GCGGTTAACCTGTCCCACCGCTACATTCCTTCACGGCAGTTGCCGGACAAGGCGGTCAGCCTGCTTGATACCGCCTCGGC
GCGCGTGGCCATCAGCCAGAGCGCGACGCCAGCCCTGATCGAGGATGCACGCGTTGCGATTACCGCTCGTGAAGCCGAGA
AATCGGCACTCGTCAGCGACAGCGATCTTGGGCTTAAGGACAGCGACCGCATCACGGCGATCGACAACGACATTGCGGCA
CTGAAGGACAAGCTGACGAACCTCGAAGCCGATTGGGCCGCAGAGCAGGAACTCGTCAAGGACATCCGGAGCATCCGAGA
GATTCTGTCCCAGCCCAAAGAAGGCGAAGATCCGGCTGTCAGGCGCGCGGAGTTGCGCGGCAAGTTCGACACACTTGAGA
GCATCCATCCGGAGAAGCGGATGGTCTATGCCCATGTAGACCAGCAATCGGTGGCGTCCGTTGTCTCTGACTGGACCGGC
ATCCCGGTCGGCCGGATGATGCGCGACGAGATCGAAACCGTCCTGAAGCTACCGGAGATCCTCAACCGCCGCGTCGTGGG
CCAATCTCATGGGCTGACGATGATCGCTAAGCGAATCGAGACCAGCCGCGCCAAGCTGGACAACCCCTCGAAGCCGATCG
GCGTGTTCATGCTGGCTGGTCCATCCGGCGTGGGCAAGACCGAAACCGCCCTGGCGCTTGCCGAGACCCTTTACGGCGGC
GAGCAGAACATGATCACGATCAACATGTCGGAGTTCCAGGAAGCGCACACCGTCTCGACCTTGAAGGGTGCACCTCCCGG
CTATGTCGGCTATGGCGAAGGTGGACGCCTCACCGAGGCTGTCCGGCGCAAGCCCTACAGTGTCATCCTGCTCGACGAGG
TGGAGAAAGCTCATCCCGACGTCCACGAGATCTTCTTCCAGGTGTTTGACAAGGGAACCATGGAGGACGGCAACGGGCGG
CGGATCGACTTCAAGAACACTTTGATCATCCTTACCACCAACGTCGGCACCGATCTGATCATGGGCCTCTCGCGCGATCC
AAAGTATCGCAACGAGCCGGAAGAGCTCGCCAAGATGCTGAGGCCGGAACTGCTGAAGGTGTTTCCCGCAGCGTTGCTCG
GACGCATCGTCTCGATACCGTACTTCCCGCTATCCGACGAGATGCTCGCCGGGATCGTTCGGTTACAGCTCGACCGGATC
GGACGACGCCTCCGCGACAATCATAACGCGTCCTTCGACTACGATGACGCGGTCGTGGAGCACATTGTGTCACGTTGCAA
CGACCCGGATTCCGGCGGGCGAATGATTGACAACATCATCACCAACACCCTGCTCCCGGAGCTGTCGCGCGCGTTCCTCA
GCAAGTCGCTTGCCAAGGAAGAAATCAAGCAAGCGCGGGTCTCGATCGAGAACGACAAATTCGCATATTCGTGGAACTGA