Detailed information of component protein


Summary

Component ID T6CP013713
Component protein type TssK
T6SS ID (Type) T6SS01061 experimental (Type i1)
Strain Vibrio cholerae 2740-80
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BBB50_RS14455
Coordinate (Strand) 123522..124856 (+)
NCBI ID WP_000458007.1
RefSeq NZ_CP016325
Uniprot ID A0A366ABE8_9VIBR, A0A366AWF7_9VIBR, Q9KN51_VIBCH, A0A0X1L1V1_VIBCO, D7HAU6_VIBCL, A0A0K9UXP9_VIBCL, A0A7U8WSA4_VIBCL, A0A0H3Q276_VIBCL, C3LUD8_VIBCM, A0A023PT89_VIBCL
KEGG ID vcx:VAA049_1794, vcz:VAB027_915, vch:VCA0114, vcq:EN18_04295, vcm:VCM66_A0112
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 6.1e-156 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-444 MFARNRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRIAIERAVGVMPDGTTFRIPQEDHLPDALEVTDASLANQIVYLAVPLRSESLMEINWPEERGTGRYVSRRLEVRDVHSVQGDTTTIDVSPVRLQLMLEREDRSAYASIAIGRILEKRPDGSVVLDPDFIPCHLNVVGISALHRFINEMSGLMRERAKNIAQRISSPAQGGVADVSDFMLLQALNRLQPQMKHLAELRSLHPERLFECLSCVCGELATFTDESRLPPSLPSYNHDSPSHSFQPLIRSLRQSLSVVLEPRAVSIQLDKRKYGLMVAPIHDPQLMESAEFIIAVKARMPLDELRRLFTQQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYHAGYTYYQLDKTSAAWAMLTHSSGFAFHVAAAFDDLELQFWAIRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9947 - -


  Protein sequence: 445 a.a.    

>T6CP013713 NZ_CP016325:123522-124856 [Vibrio cholerae 2740-80] [TssK]
MFARNRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRIAIERAVGVMPDGTTFRIPQE
DHLPDALEVTDASLANQIVYLAVPLRSESLMEINWPEERGTGRYVSRRLEVRDVHSVQGDTTTIDVSPVRLQLMLEREDR
SAYASIAIGRILEKRPDGSVVLDPDFIPCHLNVVGISALHRFINEMSGLMRERAKNIAQRISSPAQGGVADVSDFMLLQA
LNRLQPQMKHLAELRSLHPERLFECLSCVCGELATFTDESRLPPSLPSYNHDSPSHSFQPLIRSLRQSLSVVLEPRAVSI
QLDKRKYGLMVAPIHDPQLMESAEFIIAVKARMPLDELRRLFTQQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYH
AGYTYYQLDKTSAAWAMLTHSSGFAFHVAAAFDDLELQFWAIRS*

  Nucleotide sequence: 1335 bp    

>T6CP013713 NZ_CP016325:123522-124856 [Vibrio cholerae 2740-80] [TssK]
ATGTTTGCGCGTAACCGAGTGATCTGGAATGAAGGGCTATTTATTAAGCCGCAACATTTCCAGCAACAGCAGAGATATAC
GGAGTACTGCCTAGACGAGCGCCTGAGCACCGTGAGCCGTTACTTGTATGGGATTTCCGAGTTGTCGCTCAACCCGGAAT
ACCTCTCGTTTGGCCGTATTGCGATTGAGCGTGCGGTCGGCGTGATGCCCGATGGCACCACCTTTCGTATTCCTCAAGAA
GATCATCTTCCCGATGCGCTCGAAGTGACCGATGCGTCATTGGCAAACCAGATTGTCTACTTAGCCGTACCGCTACGTAG
TGAGTCGCTGATGGAGATTAACTGGCCAGAAGAGCGTGGTACGGGGCGCTATGTCAGCCGTCGTCTCGAAGTGCGTGATG
TCCATAGCGTGCAGGGTGATACCACGACGATTGATGTTTCCCCTGTGCGTTTGCAACTCATGCTTGAGCGAGAGGATCGC
AGTGCGTATGCCTCAATTGCTATTGGCCGTATTTTAGAAAAACGTCCTGATGGCAGCGTGGTGCTCGATCCGGATTTCAT
CCCTTGTCACTTGAATGTAGTGGGCATCTCTGCGCTGCACCGCTTTATTAATGAGATGTCAGGCCTGATGCGTGAGCGAG
CGAAAAATATTGCTCAGCGCATCAGCTCTCCAGCACAAGGTGGGGTTGCTGATGTTTCGGACTTTATGCTGCTGCAAGCT
TTAAACCGTCTGCAACCACAAATGAAGCATTTGGCAGAGCTGCGCAGCTTACACCCAGAGCGTCTGTTTGAATGTCTCTC
GTGTGTGTGTGGTGAGCTGGCTACCTTTACTGACGAAAGTCGTCTGCCGCCCAGTTTGCCAAGCTATAACCATGATTCAC
CCAGCCACTCTTTCCAGCCGCTGATCCGCAGCTTGCGTCAGAGCTTGAGCGTGGTGCTAGAGCCGCGTGCCGTCTCTATC
CAACTGGATAAACGTAAGTACGGTTTGATGGTTGCGCCAATCCATGATCCGCAACTGATGGAGAGTGCAGAGTTTATCAT
CGCGGTTAAAGCTCGCATGCCGTTGGATGAGCTACGCCGTCTGTTTACTCAGCAAACCAAAGTGGCATCGGTTGAGAAAA
TTCGTGAACTCATCTCACTGCAACTGCCGGGTATTCCATTGACGCCATTACCCGTCGCACCGCGCCAATTGCCTTACCAC
GCTGGCTACACCTACTACCAACTGGATAAAACCAGCGCTGCATGGGCGATGTTGACTCATTCCAGCGGTTTTGCGTTCCA
CGTTGCTGCAGCTTTTGACGATCTTGAGCTGCAATTCTGGGCTATCAGGAGCTAA