Detailed information of component protein


Summary

Component ID T6CP013708
Component protein type TssC
T6SS ID (Type) T6SS01061 experimental (Type i1)
Strain Vibrio cholerae 2740-80
Replicon chromosome
Sequence Protein sequence (492 a.a.); Nucleotide sequence (1476 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BBB50_RS14425
Coordinate (Strand) 116876..118351 (+)
NCBI ID WP_000108140.1
RefSeq NZ_CP016325
Uniprot ID A0A085SGI6_VIBCL
KEGG ID vcq:EN18_04265
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 8.6e-127 65..364
VipB_2 PF18945.2 1.8e-45 377..488
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-491 MSTTEKVLERPQLAQGSLLDEIMAQTRIAPSEEGYDIAKKGVAAFIENLMGSQHSAEPVNKSLVDQMLVELDKKISAQMDEILHNSQFQAMESAWRGLKLFVDRTDFRENNKVEILHVTKDELLEDFEFAPETAQSGLYKHVYSAGYGQFGGEPVGAIIGNYAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPEFFGIDSFEELPNIKDLKSTFESPKYTKWRSLRESEDARYLGLTAPRFLLRVPYDPIENPVKSFNYAENVSASHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGALQSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKPKVFPNTKEGKEAETNYKLGTQLPYMMIINRLAHYVKVLQREQIGAWKERQDLERELNSWIKQYVADQENPPADVRSRRPLRAARIEVMDVEGNPGWYQVSLSVRPHFKYMGANFELSLVGRLDQA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9909 - -


  Protein sequence: 492 a.a.    

>T6CP013708 NZ_CP016325:116876-118351 [Vibrio cholerae 2740-80] [TssC]
MSTTEKVLERPQLAQGSLLDEIMAQTRIAPSEEGYDIAKKGVAAFIENLMGSQHSAEPVNKSLVDQMLVELDKKISAQMD
EILHNSQFQAMESAWRGLKLFVDRTDFRENNKVEILHVTKDELLEDFEFAPETAQSGLYKHVYSAGYGQFGGEPVGAIIG
NYAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPEFFGIDSFEELPNIKDLKSTFESPKYTKWRSLRESEDARYLGLTAP
RFLLRVPYDPIENPVKSFNYAENVSASHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGAL
QSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKPKVFPNTKEGKEAETNYKLGTQLPYMMIINRLAHY
VKVLQREQIGAWKERQDLERELNSWIKQYVADQENPPADVRSRRPLRAARIEVMDVEGNPGWYQVSLSVRPHFKYMGANF
ELSLVGRLDQA*

  Nucleotide sequence: 1476 bp    

>T6CP013708 NZ_CP016325:116876-118351 [Vibrio cholerae 2740-80] [TssC]
ATGTCTACGACTGAAAAGGTATTGGAAAGGCCACAGCTTGCTCAAGGCAGCCTTCTTGATGAAATTATGGCGCAAACCCG
TATCGCACCAAGCGAAGAGGGTTACGACATCGCGAAAAAAGGTGTTGCAGCGTTTATCGAAAATCTTATGGGTTCACAAC
ACTCTGCTGAGCCTGTCAACAAATCTCTGGTTGACCAAATGTTGGTTGAACTGGATAAAAAAATCAGTGCACAGATGGAT
GAAATCCTGCACAACTCACAATTCCAAGCGATGGAATCGGCGTGGCGCGGTTTGAAGCTGTTCGTGGATCGCACTGATTT
TCGTGAAAATAACAAAGTCGAAATCCTTCACGTAACCAAAGATGAACTGCTGGAAGATTTCGAGTTTGCTCCAGAAACGG
CTCAGTCCGGTCTTTACAAGCACGTTTATTCTGCCGGTTATGGTCAATTTGGTGGCGAACCTGTTGGCGCGATCATTGGT
AACTATGCGTTTACCCCTTCAACGCCAGATATGAAGCTGCTGCAATACATGGGCGCACTGGGTGCCATGGCGCATGCTCC
TTTCATTTCAAGCGTAGGTCCTGAATTCTTTGGTATCGACTCCTTCGAAGAACTGCCTAACATTAAAGATCTCAAGTCGA
CATTTGAAAGCCCGAAATACACCAAATGGCGTTCACTGCGTGAATCGGAAGATGCTCGCTATCTTGGTTTGACTGCGCCT
CGTTTCCTGCTGCGTGTTCCTTACGATCCAATCGAAAATCCAGTGAAGTCGTTCAATTATGCGGAAAACGTCAGTGCTTC
GCACGAGCACTACCTGTGGGGTAACACGGCATTTGCCTTCGCAACTCGTTTGACGGATAGCTTTGCTAAATATCGCTGGT
GTCCAAACATTATCGGTCCACAAAGTGGTGGTGCAGTTGAAGATCTGCCGGTGCATGTCTTTGAATCTATGGGTGCATTG
CAAAGCAAGATCCCAACCGAAGTCCTGATCACGGACCGTAAAGAATTTGAACTGGCGGAAGAAGGTTTTATTGCTCTTAC
TATGCGTAAAGGCAGTGATAACGCGGCGTTCTTCTCTGCAAACTCCATTCAAAAACCTAAGGTTTTCCCAAATACCAAAG
AAGGCAAAGAAGCGGAAACCAACTACAAGTTGGGTACCCAGTTGCCGTACATGATGATCATCAACCGTTTGGCGCACTAT
GTGAAAGTTCTGCAACGTGAGCAGATCGGTGCTTGGAAAGAGCGTCAAGATCTTGAGCGTGAACTGAACTCATGGATCAA
ACAATACGTTGCTGATCAAGAGAACCCACCTGCAGACGTACGTAGCCGTCGTCCACTTCGTGCTGCGCGCATTGAAGTGA
TGGATGTGGAAGGCAATCCAGGTTGGTATCAGGTGTCGCTCTCGGTTCGTCCTCACTTTAAGTACATGGGTGCGAACTTT
GAGTTGTCATTAGTTGGACGTCTTGATCAAGCCTGA