Detailed information of component protein
Summary
| Component ID | T6CP013565 |
| Component protein type | TssI |
| T6SS ID (Type) | T6SS01047  (Type i4b) |
| Strain | Acinetobacter baumannii Ab04-mff |
| Replicon | chromosome |
| Sequence | Protein sequence (877 a.a.); Nucleotide sequence (2631 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | ACX61_RS11870 |
| Coordinate (Strand) | 2476969..2479599 (-) |
| NCBI ID | WP_005120102.1 |
| RefSeq | NZ_CP012006 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Phage_GPD | PF05954.13 | 3.9e-63 | 44..385 |
| DUF2345 | PF10106.11 | 8.9e-43 | 699..845 |
| T6SS_Vgr | PF13296.8 | 6.9e-38 | 566..672 |
| Phage_base_V | PF04717.14 | 4.1e-11 | 488..537 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 877 a.a.
>T6CP013565 NZ_CP012006:c2479599-2476969 [Acinetobacter baumannii] [TssI]
MMSHKIFQILDSLGLVAQNRVLHVQFSNASLNNQVFLQRIEGEHTLNQGSVAELLCLSTNAHIALKQFIGCQVAVDQVTD
TGQFFRTTGIITEASQGQSDGSLTIYNLTLKDPTALWHKRRNSRVFMNKSVRDISEILFKEWQGKSPLFASSITLDTSGL
TKDYDVRPFVMQSNESDYDFLTRLWRSEGINWLVDESQLFVADPNASIQPQVLRLIDDNQNYQALERRSIRYQRSSATEQ
FDTITQVKAERRLQPTSVHVQRWQADALQQEEGSGSVQGTQKHSEHYDNASLNLEDAWHVSPAWMQDLNGEDQATASGNS
QIEQLNQHINAYHHLSSKQFTVAGNVRDAQVGYWFELNEHPELDQHDSADKEFLILSKHYYNQNNLPKELQQQLERLLPQ
GKLKAAQLDSQNPEQRHFAELNVVRRNIKAVPEYNPLEHRPAAHPQRARVVGLEGESIHVDQWGRIKVRFLFTRADDHSH
DGGAGSNDNDTDSAWVDVLTPWAGAGYGARFLPRVGEIVVIDFFDGNIDRPFVVGRIHEAERHPTQFDQKGQLPDTKKLS
GIRSEEVDGKGFNQLRFDDTTGQISAQLQSSHAASQLNLGNLSHPKDKAESDGRGEGFELRTDQWGAVRAGSGLLVSTHK
QDQAQGVHLDASEAKQQIEGGLNNAKALSEVAKNQQTDPLDMLENIQTFLEVLKQEDPKKAAEFQSAVMLLASPKSIAVS
SNEDIHLSANGQLTQSAGDSINMSTQKNIVNHASQKISLFAAQEGARLFAGKGKVEIQAQGDGLDVIARKGVQITSTEDT
VYITSPTEINLTANGSQVKLNGSGIFPVTGGKLEVKAGQHLFMGGSSINPPALDLPDCSAKQTQAAQNGSAKVDLS*
MMSHKIFQILDSLGLVAQNRVLHVQFSNASLNNQVFLQRIEGEHTLNQGSVAELLCLSTNAHIALKQFIGCQVAVDQVTD
TGQFFRTTGIITEASQGQSDGSLTIYNLTLKDPTALWHKRRNSRVFMNKSVRDISEILFKEWQGKSPLFASSITLDTSGL
TKDYDVRPFVMQSNESDYDFLTRLWRSEGINWLVDESQLFVADPNASIQPQVLRLIDDNQNYQALERRSIRYQRSSATEQ
FDTITQVKAERRLQPTSVHVQRWQADALQQEEGSGSVQGTQKHSEHYDNASLNLEDAWHVSPAWMQDLNGEDQATASGNS
QIEQLNQHINAYHHLSSKQFTVAGNVRDAQVGYWFELNEHPELDQHDSADKEFLILSKHYYNQNNLPKELQQQLERLLPQ
GKLKAAQLDSQNPEQRHFAELNVVRRNIKAVPEYNPLEHRPAAHPQRARVVGLEGESIHVDQWGRIKVRFLFTRADDHSH
DGGAGSNDNDTDSAWVDVLTPWAGAGYGARFLPRVGEIVVIDFFDGNIDRPFVVGRIHEAERHPTQFDQKGQLPDTKKLS
GIRSEEVDGKGFNQLRFDDTTGQISAQLQSSHAASQLNLGNLSHPKDKAESDGRGEGFELRTDQWGAVRAGSGLLVSTHK
QDQAQGVHLDASEAKQQIEGGLNNAKALSEVAKNQQTDPLDMLENIQTFLEVLKQEDPKKAAEFQSAVMLLASPKSIAVS
SNEDIHLSANGQLTQSAGDSINMSTQKNIVNHASQKISLFAAQEGARLFAGKGKVEIQAQGDGLDVIARKGVQITSTEDT
VYITSPTEINLTANGSQVKLNGSGIFPVTGGKLEVKAGQHLFMGGSSINPPALDLPDCSAKQTQAAQNGSAKVDLS*
Nucleotide sequence: 2631 bp
>T6CP013565 NZ_CP012006:c2479599-2476969 [Acinetobacter baumannii] [TssI]
ATGATGTCCCATAAAATATTTCAAATTTTAGATAGTTTAGGATTGGTCGCACAGAATCGCGTTCTTCATGTGCAATTTTC
CAACGCATCATTAAACAATCAAGTTTTTTTACAACGTATTGAAGGCGAACATACGCTTAATCAGGGCAGCGTTGCTGAGT
TATTGTGTCTGTCGACAAACGCGCATATTGCATTAAAACAGTTTATTGGCTGTCAGGTTGCCGTCGATCAGGTCACCGAT
ACAGGCCAGTTTTTTAGAACGACAGGTATTATTACCGAAGCCAGCCAAGGGCAAAGCGACGGCTCACTCACTATTTATAA
TTTAACTTTAAAAGACCCAACTGCACTCTGGCATAAGCGCCGTAATAGCCGCGTGTTTATGAATAAAAGCGTGCGCGATA
TTAGTGAAATTCTATTTAAGGAATGGCAAGGCAAAAGTCCGTTATTTGCCTCAAGCATAACGCTTGATACATCTGGCTTA
ACTAAAGACTACGATGTGCGTCCATTTGTGATGCAGTCAAATGAAAGCGATTATGACTTTTTAACCCGTTTGTGGCGTAG
TGAAGGCATTAACTGGCTGGTCGATGAGTCACAGCTTTTTGTTGCTGACCCAAATGCTTCTATTCAGCCACAAGTCTTAC
GTTTAATTGACGATAACCAAAATTATCAGGCACTTGAACGCCGTAGCATCCGCTATCAACGCAGCAGTGCGACAGAACAG
TTTGATACCATTACCCAAGTCAAAGCTGAGCGTCGTTTACAACCAACCTCGGTTCATGTGCAACGCTGGCAAGCCGATGC
TTTGCAACAAGAAGAAGGTAGCGGCAGTGTACAAGGCACCCAAAAGCACAGCGAACACTATGACAATGCAAGCCTGAACC
TTGAAGATGCATGGCATGTTAGCCCAGCGTGGATGCAGGATTTAAACGGGGAAGATCAAGCCACAGCTTCAGGCAATAGC
CAGATTGAACAACTTAACCAGCACATCAATGCTTACCATCACTTGAGTTCTAAACAGTTTACCGTTGCAGGGAATGTCCG
TGATGCACAGGTAGGTTACTGGTTTGAACTCAATGAACACCCAGAACTTGACCAACATGACAGTGCTGATAAAGAGTTCT
TAATCTTAAGCAAACACTACTATAACCAGAATAATTTACCGAAAGAATTACAACAGCAACTTGAGCGCTTATTACCACAA
GGCAAACTCAAGGCAGCCCAACTCGACAGTCAAAACCCTGAGCAGCGCCACTTTGCTGAGCTGAATGTCGTTCGTCGTAA
CATCAAAGCTGTGCCTGAATATAATCCGCTAGAGCACCGACCAGCCGCTCACCCACAGCGCGCTAGAGTGGTGGGTTTAG
AGGGTGAAAGCATTCATGTCGACCAGTGGGGACGCATTAAAGTCCGTTTCCTGTTTACCCGAGCTGATGACCACAGTCAT
GATGGTGGAGCAGGAAGTAATGACAATGACACTGACTCGGCTTGGGTCGATGTGCTGACTCCATGGGCGGGTGCAGGTTA
TGGCGCACGTTTCTTGCCACGTGTTGGTGAAATTGTTGTCATCGATTTCTTTGACGGGAACATTGACCGCCCGTTTGTGG
TGGGGCGTATTCATGAAGCCGAGCGCCACCCGACCCAGTTCGACCAGAAAGGTCAGCTACCTGACACTAAAAAACTCAGT
GGCATCCGCTCTGAGGAAGTCGATGGCAAAGGCTTTAACCAGCTCCGTTTTGACGACACGACAGGGCAAATCAGTGCCCA
GCTACAAAGTAGCCATGCAGCCAGCCAGCTAAACTTGGGTAACTTAAGCCATCCAAAAGACAAGGCAGAAAGTGATGGTC
GTGGGGAAGGTTTTGAACTCAGAACTGACCAATGGGGAGCAGTCAGAGCAGGCAGTGGTTTACTCGTTAGTACCCACAAA
CAGGATCAAGCCCAAGGTGTACACCTTGATGCAAGCGAGGCCAAGCAACAAATCGAAGGCGGCCTCAACAATGCCAAGGC
ACTCAGTGAAGTTGCTAAAAATCAGCAAACTGACCCGTTAGATATGCTTGAGAATATTCAGACTTTCTTAGAAGTTCTCA
AACAAGAAGATCCTAAAAAGGCTGCTGAGTTTCAATCAGCAGTGATGCTGCTGGCATCACCAAAAAGTATTGCTGTAAGT
AGTAATGAAGATATACACCTCAGTGCAAATGGTCAGCTCACTCAAAGTGCTGGAGATAGCATTAATATGAGTACGCAAAA
GAATATAGTGAATCATGCGAGCCAAAAGATTAGTCTCTTTGCTGCTCAGGAGGGTGCTCGACTTTTTGCTGGGAAGGGCA
AAGTAGAAATTCAAGCTCAAGGTGATGGCTTAGATGTCATTGCTCGAAAAGGTGTACAGATTACTTCAACCGAAGACACA
GTTTATATTACTAGCCCAACTGAGATTAATCTGACAGCAAACGGATCTCAAGTTAAGCTGAACGGTTCAGGTATTTTCCC
TGTTACGGGCGGTAAGCTTGAGGTGAAAGCTGGGCAGCACTTGTTTATGGGAGGGTCATCAATAAATCCACCTGCTTTAG
ATTTACCAGACTGTTCGGCTAAGCAAACTCAAGCTGCTCAAAATGGTTCGGCTAAGGTAGATTTATCATGA
ATGATGTCCCATAAAATATTTCAAATTTTAGATAGTTTAGGATTGGTCGCACAGAATCGCGTTCTTCATGTGCAATTTTC
CAACGCATCATTAAACAATCAAGTTTTTTTACAACGTATTGAAGGCGAACATACGCTTAATCAGGGCAGCGTTGCTGAGT
TATTGTGTCTGTCGACAAACGCGCATATTGCATTAAAACAGTTTATTGGCTGTCAGGTTGCCGTCGATCAGGTCACCGAT
ACAGGCCAGTTTTTTAGAACGACAGGTATTATTACCGAAGCCAGCCAAGGGCAAAGCGACGGCTCACTCACTATTTATAA
TTTAACTTTAAAAGACCCAACTGCACTCTGGCATAAGCGCCGTAATAGCCGCGTGTTTATGAATAAAAGCGTGCGCGATA
TTAGTGAAATTCTATTTAAGGAATGGCAAGGCAAAAGTCCGTTATTTGCCTCAAGCATAACGCTTGATACATCTGGCTTA
ACTAAAGACTACGATGTGCGTCCATTTGTGATGCAGTCAAATGAAAGCGATTATGACTTTTTAACCCGTTTGTGGCGTAG
TGAAGGCATTAACTGGCTGGTCGATGAGTCACAGCTTTTTGTTGCTGACCCAAATGCTTCTATTCAGCCACAAGTCTTAC
GTTTAATTGACGATAACCAAAATTATCAGGCACTTGAACGCCGTAGCATCCGCTATCAACGCAGCAGTGCGACAGAACAG
TTTGATACCATTACCCAAGTCAAAGCTGAGCGTCGTTTACAACCAACCTCGGTTCATGTGCAACGCTGGCAAGCCGATGC
TTTGCAACAAGAAGAAGGTAGCGGCAGTGTACAAGGCACCCAAAAGCACAGCGAACACTATGACAATGCAAGCCTGAACC
TTGAAGATGCATGGCATGTTAGCCCAGCGTGGATGCAGGATTTAAACGGGGAAGATCAAGCCACAGCTTCAGGCAATAGC
CAGATTGAACAACTTAACCAGCACATCAATGCTTACCATCACTTGAGTTCTAAACAGTTTACCGTTGCAGGGAATGTCCG
TGATGCACAGGTAGGTTACTGGTTTGAACTCAATGAACACCCAGAACTTGACCAACATGACAGTGCTGATAAAGAGTTCT
TAATCTTAAGCAAACACTACTATAACCAGAATAATTTACCGAAAGAATTACAACAGCAACTTGAGCGCTTATTACCACAA
GGCAAACTCAAGGCAGCCCAACTCGACAGTCAAAACCCTGAGCAGCGCCACTTTGCTGAGCTGAATGTCGTTCGTCGTAA
CATCAAAGCTGTGCCTGAATATAATCCGCTAGAGCACCGACCAGCCGCTCACCCACAGCGCGCTAGAGTGGTGGGTTTAG
AGGGTGAAAGCATTCATGTCGACCAGTGGGGACGCATTAAAGTCCGTTTCCTGTTTACCCGAGCTGATGACCACAGTCAT
GATGGTGGAGCAGGAAGTAATGACAATGACACTGACTCGGCTTGGGTCGATGTGCTGACTCCATGGGCGGGTGCAGGTTA
TGGCGCACGTTTCTTGCCACGTGTTGGTGAAATTGTTGTCATCGATTTCTTTGACGGGAACATTGACCGCCCGTTTGTGG
TGGGGCGTATTCATGAAGCCGAGCGCCACCCGACCCAGTTCGACCAGAAAGGTCAGCTACCTGACACTAAAAAACTCAGT
GGCATCCGCTCTGAGGAAGTCGATGGCAAAGGCTTTAACCAGCTCCGTTTTGACGACACGACAGGGCAAATCAGTGCCCA
GCTACAAAGTAGCCATGCAGCCAGCCAGCTAAACTTGGGTAACTTAAGCCATCCAAAAGACAAGGCAGAAAGTGATGGTC
GTGGGGAAGGTTTTGAACTCAGAACTGACCAATGGGGAGCAGTCAGAGCAGGCAGTGGTTTACTCGTTAGTACCCACAAA
CAGGATCAAGCCCAAGGTGTACACCTTGATGCAAGCGAGGCCAAGCAACAAATCGAAGGCGGCCTCAACAATGCCAAGGC
ACTCAGTGAAGTTGCTAAAAATCAGCAAACTGACCCGTTAGATATGCTTGAGAATATTCAGACTTTCTTAGAAGTTCTCA
AACAAGAAGATCCTAAAAAGGCTGCTGAGTTTCAATCAGCAGTGATGCTGCTGGCATCACCAAAAAGTATTGCTGTAAGT
AGTAATGAAGATATACACCTCAGTGCAAATGGTCAGCTCACTCAAAGTGCTGGAGATAGCATTAATATGAGTACGCAAAA
GAATATAGTGAATCATGCGAGCCAAAAGATTAGTCTCTTTGCTGCTCAGGAGGGTGCTCGACTTTTTGCTGGGAAGGGCA
AAGTAGAAATTCAAGCTCAAGGTGATGGCTTAGATGTCATTGCTCGAAAAGGTGTACAGATTACTTCAACCGAAGACACA
GTTTATATTACTAGCCCAACTGAGATTAATCTGACAGCAAACGGATCTCAAGTTAAGCTGAACGGTTCAGGTATTTTCCC
TGTTACGGGCGGTAAGCTTGAGGTGAAAGCTGGGCAGCACTTGTTTATGGGAGGGTCATCAATAAATCCACCTGCTTTAG
ATTTACCAGACTGTTCGGCTAAGCAAACTCAAGCTGCTCAAAATGGTTCGGCTAAGGTAGATTTATCATGA