Detailed information of component protein


Summary

Component ID T6CP013560
Component protein type TssF
T6SS ID (Type) T6SS01047 insolico (Type i4b)
Strain Acinetobacter baumannii Ab04-mff
Replicon chromosome
Sequence Protein sequence (604 a.a.); Nucleotide sequence (1812 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACX61_RS11795
Coordinate (Strand) 2462447..2464258 (-)
NCBI ID WP_031958288.1
RefSeq NZ_CP012006
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1e-145 3..599
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 604 a.a.    

>T6CP013560 NZ_CP012006:c2464258-2462447 [Acinetobacter baumannii] [TssF]
VIEELLPFYEKQLQEFGQQSREFAQKYPKIAQRLSLNQEQIDDPHIERLIQAFSLIAARIDKKLTDSYDVFTRSLFEVMF
PQYLRHFPACSVVSFEDINKIKQLTEPHLVPHHTVLKSRSFKGVQCEFNTTQDVRLLPIHLSGLDFKTTPSAHMHLNQNA
TLSLKFEIFNNAHACLTDEKLPIYLDAISNFPLQVLDSIFKKGTSFAIKYGQIIVELSKNPFELTGFAEQESLLPLDQHT
HHAYRLLMEYFCFPEKFSYLKLDLDFLKRIPQHVSEFELLIHFKLNLNDQAVVRNYSELNIANFKLFTTPVINLFEKYAE
PQKIVHKQLEYPLVTDAHHPEFYQVYSILEMNMVREKTNQEESYVPVLPFFAMSHYHNDTARFFYSVNYQKLQSNFVEMG
YSIISKNLNPFSTRSDFISTKLLCSNRDLPHEALGQSNNVLNLNDSSLARRAIVLKRPTKPYKFEQGQSEQWRVISHLSL
NSLALMKGDAVSHVKELLALYNLPQSKENYLIIESIKKLEFSLTHKLVDGKPFPMFVRGVKAELQIDSSVFRGHSLYIFS
QLLSRVFNLKVQINSFVDLVVKDYSSQQELYQCSQNVGGKTLL*

  Nucleotide sequence: 1812 bp    

>T6CP013560 NZ_CP012006:c2464258-2462447 [Acinetobacter baumannii] [TssF]
GTGATAGAAGAGCTTTTACCGTTTTATGAAAAACAATTACAAGAATTTGGTCAACAATCTCGGGAATTTGCCCAAAAATA
TCCAAAAATTGCTCAGCGCTTATCTTTAAATCAAGAGCAAATTGATGACCCACATATTGAACGTCTGATTCAGGCTTTTT
CGCTGATTGCTGCTCGAATCGATAAAAAACTAACAGACAGTTACGATGTTTTTACTCGTTCTTTATTTGAGGTGATGTTC
CCTCAATACTTACGACATTTTCCTGCGTGTTCAGTTGTTAGCTTTGAAGATATTAATAAGATTAAACAGCTTACAGAACC
TCATCTTGTACCTCATCATACGGTTTTGAAATCTCGTAGTTTCAAGGGAGTACAGTGTGAGTTTAATACAACTCAAGATG
TTAGATTACTGCCTATTCATTTAAGTGGTTTAGATTTTAAAACTACACCTAGTGCACATATGCACTTAAATCAAAATGCG
ACGTTGAGCCTTAAATTTGAAATTTTTAATAATGCTCATGCTTGTTTAACTGATGAGAAGCTTCCTATTTATTTGGATGC
TATCTCTAATTTTCCTCTACAGGTCCTTGATAGTATTTTCAAAAAAGGAACCAGTTTTGCGATTAAATATGGACAAATAA
TTGTAGAATTGAGCAAGAATCCATTCGAATTGACTGGTTTTGCAGAACAAGAAAGTTTATTACCGCTTGATCAACATACC
CATCATGCTTATCGTTTGTTGATGGAATACTTTTGTTTCCCGGAAAAGTTTAGTTATCTTAAGCTTGATTTAGATTTTTT
AAAGCGAATACCTCAGCATGTATCCGAATTTGAGCTTTTAATTCATTTCAAATTAAACTTAAATGATCAAGCCGTTGTTA
GAAATTATTCTGAGCTAAATATTGCAAACTTTAAATTATTTACTACCCCAGTAATTAATTTATTTGAAAAATATGCTGAA
CCTCAGAAGATAGTTCACAAGCAATTAGAATATCCTTTAGTTACAGATGCACATCATCCTGAGTTTTATCAGGTATATTC
AATACTTGAGATGAATATGGTGCGTGAAAAAACAAATCAGGAAGAAAGCTATGTTCCTGTTTTGCCTTTTTTTGCGATGA
GCCATTACCACAATGATACAGCTCGCTTTTTTTACTCAGTAAACTATCAAAAGTTACAGTCCAATTTCGTTGAAATGGGC
TATTCGATTATTTCTAAAAATTTAAATCCATTTTCAACGCGCTCAGATTTTATTAGTACCAAATTATTATGTTCAAACCG
TGATTTACCTCATGAAGCACTGGGTCAGTCTAATAACGTATTAAATTTAAATGATAGTAGCTTGGCGAGACGTGCCATTG
TTTTAAAACGACCTACAAAGCCTTATAAGTTTGAACAAGGCCAAAGTGAACAGTGGCGTGTGATCTCGCATCTTTCATTA
AATAGCTTAGCACTTATGAAAGGAGATGCTGTTTCTCATGTTAAAGAGCTGCTGGCTTTATATAACTTACCGCAGTCAAA
AGAAAATTATTTAATTATAGAATCAATTAAAAAATTAGAATTTTCGCTTACCCATAAACTTGTAGATGGCAAACCATTTC
CAATGTTTGTAAGAGGAGTGAAAGCTGAATTACAAATTGACTCATCAGTATTTAGAGGGCATAGCTTATATATTTTTAGT
CAGTTATTAAGTCGTGTTTTTAATTTAAAGGTTCAAATTAATAGTTTTGTTGATTTGGTGGTTAAGGATTATTCATCTCA
GCAGGAGTTATACCAATGCAGTCAGAACGTTGGTGGCAAGACTCTTCTGTAA