Detailed information of component protein


Summary

Component ID T6CP013553
Component protein type TssI
T6SS ID (Type) T6SS01046 experimental (Type i4b)
Strain Acinetobacter baumannii ATCC 17978
Replicon chromosome
Sequence Protein sequence (928 a.a.); Nucleotide sequence (2784 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACX60_RS11695
Coordinate (Strand) 2458534..2461317 (-)
NCBI ID WP_049594843.1
RefSeq NZ_CP012004
Uniprot ID A0A1E3M2N9_ACIBA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.2e-63 44..385
DUF2345 PF10106.11 7.4e-43 699..845
T6SS_Vgr PF13296.8 3.6e-38 566..672
Phage_base_V PF04717.14 5.7e-11 488..537
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-927 MMSHKIFQILDSLGLVAQNRVLHVQFSNASLNNQVFLQRIEGEHTLNQGSVAELLCLSTNAHIALKQFIGCQVAVDQVTDTGQFFRTTGIITEASQGQSDGSLTIYNLTLKDPTALWHKRRNSRVFMNKSVRDISEILFKEWQGKSPLFASSITLDTSGLTKDYDVRPFVMQSNESDYDFLTRLWRSEGINWLVDESQLFVADPNASIQPQVLRLIDDNQNYQALERRSIRYQRSSATEQFDTITQVKAERRLQPTSVHVQRWQADALQQEEGSGSVQGTQKHSEHYDNASLNLEDAWHVSPAWMQDLNGKDQATASGNSQIEQLNQHINAYHHLSSKQFTVAGNVRDAQVGYWFELNDHPELDQHDSADKEFLILSKHYYNQNNLPKELQQQLERLLPQGKLKAAQLDSQNPEQRHFAELNVVRRNIKAVPEYNPLEHRPAAHPQRARVVGLEGESIHVDQWGRIKVRFLFTRADDHSHDGGAGSNDNDTDSAWVDVLTPWAGAGYGARFLPRVGEIVVIDFFDGNVDRPFVVGRIHEAERQPTQFDQKGQLPDTKKLSGIRSEEVDGKGFNQLRFDDTTGQISAQLQSSHAASQLNLGNLSHPKDKAESDGRGEGFELRTDQWGAVRAGSGLLISTHKQDQAQGVHLDASEAKQQIEGGLNNAKALSEVAKNQQTDPLDMLENIQTFLEVLKQEDPKKAAEFQSAVMLLASPKSIAVSSNEDIHLSANGQLTQSAGDSINMSTQKNIVNHASQKISLFAAQEGARLFAGKGKVEIQAQGDGLDVIARKGIQITSTEDTVFITSPTEINLTANGSQVKLNGSGIFPVTGGKLEVKAGQHLFMGGEQVTPPKKQENKPCYLTFEITDLDGKPAKNVEYIAFRMDGSRQKGQTNAQGLTQRFETDGSEQISIHICDENASKYKLAAKG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9713 - -


  Protein sequence: 928 a.a.    

>T6CP013553 NZ_CP012004:c2461317-2458534 [Acinetobacter baumannii] [TssI]
MMSHKIFQILDSLGLVAQNRVLHVQFSNASLNNQVFLQRIEGEHTLNQGSVAELLCLSTNAHIALKQFIGCQVAVDQVTD
TGQFFRTTGIITEASQGQSDGSLTIYNLTLKDPTALWHKRRNSRVFMNKSVRDISEILFKEWQGKSPLFASSITLDTSGL
TKDYDVRPFVMQSNESDYDFLTRLWRSEGINWLVDESQLFVADPNASIQPQVLRLIDDNQNYQALERRSIRYQRSSATEQ
FDTITQVKAERRLQPTSVHVQRWQADALQQEEGSGSVQGTQKHSEHYDNASLNLEDAWHVSPAWMQDLNGKDQATASGNS
QIEQLNQHINAYHHLSSKQFTVAGNVRDAQVGYWFELNDHPELDQHDSADKEFLILSKHYYNQNNLPKELQQQLERLLPQ
GKLKAAQLDSQNPEQRHFAELNVVRRNIKAVPEYNPLEHRPAAHPQRARVVGLEGESIHVDQWGRIKVRFLFTRADDHSH
DGGAGSNDNDTDSAWVDVLTPWAGAGYGARFLPRVGEIVVIDFFDGNVDRPFVVGRIHEAERQPTQFDQKGQLPDTKKLS
GIRSEEVDGKGFNQLRFDDTTGQISAQLQSSHAASQLNLGNLSHPKDKAESDGRGEGFELRTDQWGAVRAGSGLLISTHK
QDQAQGVHLDASEAKQQIEGGLNNAKALSEVAKNQQTDPLDMLENIQTFLEVLKQEDPKKAAEFQSAVMLLASPKSIAVS
SNEDIHLSANGQLTQSAGDSINMSTQKNIVNHASQKISLFAAQEGARLFAGKGKVEIQAQGDGLDVIARKGIQITSTEDT
VFITSPTEINLTANGSQVKLNGSGIFPVTGGKLEVKAGQHLFMGGEQVTPPKKQENKPCYLTFEITDLDGKPAKNVEYIA
FRMDGSRQKGQTNAQGLTQRFETDGSEQISIHICDENASKYKLAAKG*

  Nucleotide sequence: 2784 bp    

>T6CP013553 NZ_CP012004:c2461317-2458534 [Acinetobacter baumannii] [TssI]
ATGATGTCCCATAAAATATTTCAAATTTTAGATAGTTTAGGATTGGTCGCACAGAATCGCGTTCTTCATGTGCAATTTTC
CAACGCATCATTAAACAATCAAGTTTTTTTACAACGTATTGAAGGCGAACATACGCTTAATCAGGGCAGCGTTGCTGAGT
TATTATGTCTGTCGACAAACGCGCATATTGCATTAAAACAGTTTATTGGTTGTCAGGTTGCCGTCGATCAGGTCACCGAT
ACAGGCCAGTTTTTTAGAACGACAGGTATTATTACCGAAGCCAGCCAAGGGCAAAGCGACGGCTCACTCACTATTTATAA
TTTAACTTTAAAAGACCCAACTGCACTCTGGCATAAACGCCGTAATAGTCGCGTGTTTATGAATAAAAGCGTGCGCGATA
TTAGTGAAATTCTATTTAAGGAATGGCAAGGCAAAAGTCCGTTATTTGCCTCAAGTATAACGCTCGATACATCTGGCTTA
ACTAAAGACTACGATGTGCGTCCATTTGTGATGCAGTCAAATGAAAGCGATTATGACTTTTTAACCCGTTTGTGGCGTAG
TGAAGGTATTAACTGGCTGGTCGATGAGTCACAGCTTTTTGTCGCTGACCCAAATGCTTCTATCCAGCCACAAGTACTGC
GTTTAATTGACGATAACCAAAATTATCAGGCACTTGAACGCCGTAGCATCCGCTATCAACGCAGCAGTGCGACAGAGCAG
TTCGATACGATTACCCAAGTCAAAGCTGAGCGTCGTTTACAACCAACCTCGGTTCATGTGCAACGCTGGCAAGCCGATGC
TTTGCAACAAGAAGAAGGTAGCGGCAGCGTACAAGGCACCCAAAAGCACAGCGAACACTATGACAATGCCAGCCTGAACC
TTGAAGATGCATGGCATGTTAGCCCAGCGTGGATGCAGGATTTAAACGGGAAAGATCAAGCCACAGCTTCGGGAAATAGC
CAGATTGAACAACTTAACCAGCACATCAATGCTTACCATCACCTGAGTTCTAAACAGTTTACCGTTGCAGGTAACGTCCG
TGATGCACAAGTGGGTTACTGGTTTGAGCTGAATGACCATCCGGAACTTGACCAACATGATAGTGCTGATAAAGAGTTCT
TAATCTTAAGCAAACACTACTATAACCAGAATAATTTACCGAAAGAATTACAACAACAACTTGAGCGCCTATTACCACAA
GGCAAACTCAAGGCAGCCCAACTCGACAGCCAAAACCCTGAGCAGCGCCACTTTGCTGAGCTGAATGTCGTTCGTCGTAA
TATTAAAGCTGTGCCTGAATATAACCCGTTAGAGCACCGACCAGCCGCTCACCCACAGCGCGCTAGAGTGGTGGGTTTAG
AGGGTGAAAGCATTCATGTCGACCAGTGGGGACGCATTAAAGTCCGTTTCCTGTTTACCCGAGCTGATGACCACAGCCAT
GATGGTGGAGCTGGAAGTAACGACAATGACACCGACTCGGCTTGGGTCGATGTACTCACTCCTTGGGCAGGGGCAGGTTA
TGGCGCACGTTTCTTGCCACGTGTTGGTGAAATTGTTGTCATCGATTTCTTTGACGGTAATGTTGACCGCCCGTTTGTGG
TGGGGCGTATTCATGAAGCCGAGCGCCAACCAACGCAGTTCGACCAGAAAGGCCAGCTACCTGACACCAAGAAACTTAGC
GGTATCCGTTCAGAAGAAGTCGATGGCAAAGGCTTTAACCAGCTCCGTTTTGATGACACCACAGGCCAAATCAGTGCCCA
GTTACAAAGTAGCCATGCCGCAAGCCAGCTAAACTTGGGTAACTTAAGCCATCCAAAAGACAAGGCGGAAAGCGATGGTC
GTGGGGAAGGTTTTGAACTCAGAACTGACCAGTGGGGCGCGGTTCGAGCAGGCAGTGGCTTACTCATTAGTACCCACAAA
CAGGATCAGGCTCAAGGTGTACATCTTGATGCAAGCGAGGCTAAGCAACAAATCGAAGGCGGCCTCAATAATGCCAAGGC
ACTCAGTGAAGTTGCTAAAAATCAGCAAACTGACCCGTTAGATATGCTTGAGAATATTCAGACTTTTTTAGAAGTTCTCA
AACAAGAAGATCCTAAAAAAGCTGCTGAATTTCAATCAGCAGTGATGCTGCTGGCATCACCAAAAAGTATTGCTGTAAGT
AGTAATGAAGATATACACCTCAGTGCAAATGGTCAGCTCACTCAAAGTGCTGGAGATAGCATTAATATGAGTACGCAAAA
GAATATAGTGAATCATGCGAGCCAAAAGATTAGTCTCTTTGCCGCTCAGGAGGGTGCTCGACTTTTTGCTGGGAAGGGCA
AAGTAGAAATTCAAGCTCAAGGTGATGGCTTAGATGTCATTGCTCGAAAAGGTATACAGATTACTTCAACCGAAGACACA
GTTTTTATTACTAGCCCAACTGAGATTAATCTGACAGCAAACGGATCTCAAGTTAAGCTGAACGGTTCAGGTATTTTCCC
TGTCACGGGTGGTAAGCTTGAGGTGAAGGCTGGGCAGCACTTGTTTATGGGGGGAGAACAAGTTACTCCTCCTAAAAAGC
AGGAAAATAAACCTTGTTATTTGACTTTTGAAATTACTGATTTAGATGGAAAGCCAGCGAAAAATGTAGAGTATATTGCT
TTTAGAATGGATGGTAGCCGGCAAAAGGGACAAACTAATGCCCAAGGTTTAACTCAAAGATTTGAAACTGATGGCTCAGA
ACAAATTTCCATTCATATTTGTGATGAAAATGCTTCTAAATATAAACTAGCGGCAAAAGGTTAA