Detailed information of component protein
Summary
| Component ID | T6CP013550 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01046  (Type i4b) |
| Strain | Acinetobacter baumannii ATCC 17978 |
| Replicon | chromosome |
| Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | ACX60_RS11665 |
| Coordinate (Strand) | 2450512..2451015 (-) |
| NCBI ID | WP_000653195.1 |
| RefSeq | NZ_CP012004 |
| Uniprot ID | A0A0R1C1Y7_ACINO, A0A7U4F766_ACIBA, A0A009RJK0_9GAMM, A0A010KAB5_9GAMM, A0A022IZT8_9GAMM, A0A013UTK5_9GAMM, A0A013TMC1_9GAMM, A0A0E1PSF3_ACIBA, A0A0J0ZX19_ACIBA, N8S3X6_9GAMM, A0A1V2V3D7_9GAMM, A0A4R6CNR4_9GAMM, A0A3R9CCF9_9GAMM, A0A3R9GB64_9GAMM, A0A7U3XZ91_ACIBC, R9RIP4_ACIBA, A0A1A0GM72_ACICA, A0A7U3Y5A8_ACIB5, A0A143IYH8_ACIPI, A0A654KYA4_ACIBM, B0VB03_ACIBY, A0A5K6CS27_ACIB3, D0C8P3_ACIB2, F0KJP8_ACICP, L9MI81_9GAMM, A0A385EU73_ACIBA |
| KEGG ID | abz:ABZJ_01456, abau:IX87_03965, abk:LX00_06415, abw:BL01_13265, acc:BDGL_000641, aby:ABAYE2413 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 5.4e-40 | 5..139 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-167 | MKDIYVEFRGKYKVDGESRDSEHKGWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMVFVKDLDATSPKLWEACSAGYTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEEGVPTEAFGLKYAAVEWTYNQQDINGTAKGAVTKKWSLSNNTASYAA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9825 | - | - |
Protein sequence: 168 a.a.
>T6CP013550 NZ_CP012004:c2451015-2450512 [Acinetobacter baumannii] [TssD]
MKDIYVEFRGKYKVDGESRDSEHKGWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMVFVKDLDATSPKLWEACSAG
YTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEEGVPTEAFGLKYAAVEWTYNQQDINGTAKGAVTKKWSLSN
NTASYAA*
MKDIYVEFRGKYKVDGESRDSEHKGWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMVFVKDLDATSPKLWEACSAG
YTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEEGVPTEAFGLKYAAVEWTYNQQDINGTAKGAVTKKWSLSN
NTASYAA*
Nucleotide sequence: 504 bp
>T6CP013550 NZ_CP012004:c2451015-2450512 [Acinetobacter baumannii] [TssD]
ATGAAAGATATATACGTTGAGTTTCGCGGTAAATATAAAGTTGATGGAGAATCTCGTGATTCTGAGCACAAAGGTTGGTT
AGAAGTTAACTCTTGGTCTCATAACATCCGTCAACCTAAATCTGCTACTTCAAGTAGTGTAGGCGGCCACACTGCTGAAC
GTGTTGAACATTCTGACATGGTTTTCGTAAAAGACTTAGATGCAACTAGCCCTAAATTATGGGAAGCTTGTTCAGCTGGT
TATACATTTGATGAAGTACAAATCGACTTCTATCGTGCAAATGGCGATAAACGTATCAAGTACTTACAAATCAAATTGAA
GCACGTTTTAGTTTCTAGTGTGACTCCAACTGTTAACGAAGAAGGCGTTCCTACAGAAGCATTCGGTTTGAAATATGCTG
CTGTTGAGTGGACTTATAACCAACAAGATATTAACGGTACTGCTAAAGGTGCTGTTACTAAGAAATGGTCACTTTCTAAT
AATACAGCTTCTTACGCAGCGTAA
ATGAAAGATATATACGTTGAGTTTCGCGGTAAATATAAAGTTGATGGAGAATCTCGTGATTCTGAGCACAAAGGTTGGTT
AGAAGTTAACTCTTGGTCTCATAACATCCGTCAACCTAAATCTGCTACTTCAAGTAGTGTAGGCGGCCACACTGCTGAAC
GTGTTGAACATTCTGACATGGTTTTCGTAAAAGACTTAGATGCAACTAGCCCTAAATTATGGGAAGCTTGTTCAGCTGGT
TATACATTTGATGAAGTACAAATCGACTTCTATCGTGCAAATGGCGATAAACGTATCAAGTACTTACAAATCAAATTGAA
GCACGTTTTAGTTTCTAGTGTGACTCCAACTGTTAACGAAGAAGGCGTTCCTACAGAAGCATTCGGTTTGAAATATGCTG
CTGTTGAGTGGACTTATAACCAACAAGATATTAACGGTACTGCTAAAGGTGCTGTTACTAAGAAATGGTCACTTTCTAAT
AATACAGCTTCTTACGCAGCGTAA