Detailed information of component protein


Summary

Component ID T6CP013548
Component protein type TssF
T6SS ID (Type) T6SS01046 experimental (Type i4b)
Strain Acinetobacter baumannii ATCC 17978
Replicon chromosome
Sequence Protein sequence (604 a.a.); Nucleotide sequence (1812 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACX60_RS11655
Coordinate (Strand) 2448128..2449939 (-)
NCBI ID WP_049594842.1
RefSeq NZ_CP012004
Uniprot ID A0A1E3M2P6_ACIBA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 6e-146 3..599
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-603 VIEELLPFYEKQLQEFGQQSREFAQKYPKIAQRLSLNQEQIDDPHIERLIQAFSLIAARIDKKLTDSYDVFTRSLFEVMFPQYLRHFPACSVVSFEDINKIKQLKEPHLVPHHTVLKSRSFKGVQCEFNTTQDVKLLPIHLSGLDFKTTPSAHMHLNQNATLSLKFEIFNNAHACLTDEKLPIYLDAISNFPLQVLDSIFKKGTSFAVKYGQTIVELSKNPFELIGFAEQESLLPLDQHTHHAYRLLMEYFCFPEKFSYLKLDLDFLKRIPQHVSEFELLIHFKLNLNDQAVVRNYSELNIANFKLFTTPVINLFEKYAEPQKIVHKQLEYPLVTDAHHPEFYQVYSILEMNMVREKTNQEESYVPVLPFFAMSHYHNDTARFFYSVNYQKLQSNFVEMGYSIISKNLNPFSTRSDFISTKLLCSNRDLPHEALGQSNNVLNLNDSSLARRAIVLKRPTKPYKFEQGQSEQWRVISHLSLNSLALMKGDAVSHVKELLALYNLPQSKENYLIIESIKKLEFSLTHKLVDGKPFPMFVRGVKAELQIDSSVFRGHSLYIFSQLLSRVFNLKVQINSFVDLVVKDYSSQQELYQCTQNVGGKTLL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9964 - -


  Protein sequence: 604 a.a.    

>T6CP013548 NZ_CP012004:c2449939-2448128 [Acinetobacter baumannii] [TssF]
VIEELLPFYEKQLQEFGQQSREFAQKYPKIAQRLSLNQEQIDDPHIERLIQAFSLIAARIDKKLTDSYDVFTRSLFEVMF
PQYLRHFPACSVVSFEDINKIKQLKEPHLVPHHTVLKSRSFKGVQCEFNTTQDVKLLPIHLSGLDFKTTPSAHMHLNQNA
TLSLKFEIFNNAHACLTDEKLPIYLDAISNFPLQVLDSIFKKGTSFAVKYGQTIVELSKNPFELIGFAEQESLLPLDQHT
HHAYRLLMEYFCFPEKFSYLKLDLDFLKRIPQHVSEFELLIHFKLNLNDQAVVRNYSELNIANFKLFTTPVINLFEKYAE
PQKIVHKQLEYPLVTDAHHPEFYQVYSILEMNMVREKTNQEESYVPVLPFFAMSHYHNDTARFFYSVNYQKLQSNFVEMG
YSIISKNLNPFSTRSDFISTKLLCSNRDLPHEALGQSNNVLNLNDSSLARRAIVLKRPTKPYKFEQGQSEQWRVISHLSL
NSLALMKGDAVSHVKELLALYNLPQSKENYLIIESIKKLEFSLTHKLVDGKPFPMFVRGVKAELQIDSSVFRGHSLYIFS
QLLSRVFNLKVQINSFVDLVVKDYSSQQELYQCTQNVGGKTLL*

  Nucleotide sequence: 1812 bp    

>T6CP013548 NZ_CP012004:c2449939-2448128 [Acinetobacter baumannii] [TssF]
GTGATAGAAGAGCTTTTACCGTTTTATGAAAAACAATTACAAGAATTTGGTCAACAATCTCGGGAATTTGCCCAAAAATA
TCCAAAAATTGCTCAGCGCTTATCTTTAAATCAAGAGCAAATTGATGACCCACATATTGAACGTCTGATTCAGGCTTTTT
CGCTGATTGCTGCTCGAATCGATAAAAAACTAACAGACAGTTACGATGTTTTTACTCGTTCTTTATTTGAGGTGATGTTC
CCTCAATACTTACGACATTTTCCTGCGTGTTCAGTTGTTAGCTTTGAAGATATTAATAAGATTAAACAGCTTAAAGAACC
TCATCTTGTACCTCATCATACGGTTTTGAAATCTCGTAGTTTCAAAGGAGTACAGTGTGAGTTTAATACAACTCAAGATG
TTAAATTACTGCCTATTCATTTAAGTGGTTTAGATTTTAAAACTACACCTAGTGCACATATGCACTTAAATCAAAATGCG
ACGTTGAGCCTTAAATTTGAAATTTTTAATAATGCTCATGCTTGTTTAACTGATGAGAAGCTTCCTATTTATTTGGATGC
TATCTCTAATTTTCCTCTACAGGTCCTTGATAGTATTTTCAAAAAAGGAACCAGTTTTGCGGTTAAATATGGACAAACAA
TTGTAGAATTGAGCAAGAATCCATTCGAATTGATTGGTTTTGCAGAACAAGAAAGTTTATTACCGCTTGATCAACATACC
CATCATGCTTATCGTTTGTTGATGGAATACTTTTGTTTCCCGGAAAAGTTTAGTTATCTTAAGCTCGATTTAGATTTTTT
AAAGCGAATACCTCAGCATGTATCCGAATTTGAGCTTTTAATTCATTTCAAATTAAACTTAAATGATCAAGCCGTTGTTA
GAAACTATTCTGAGCTAAATATTGCAAACTTTAAATTATTTACTACCCCAGTAATTAATTTATTTGAAAAATATGCTGAA
CCCCAGAAGATAGTTCACAAGCAATTAGAATATCCTTTAGTTACAGATGCACATCATCCTGAGTTTTATCAGGTATATTC
AATACTTGAGATGAATATGGTGCGTGAAAAAACAAATCAGGAAGAAAGCTATGTTCCTGTTTTGCCTTTTTTTGCGATGA
GCCATTACCACAATGATACAGCTCGCTTTTTTTACTCAGTGAACTATCAAAAGTTACAGTCCAATTTCGTTGAAATGGGT
TATTCTATTATTTCTAAAAATTTAAATCCATTTTCAACGCGCTCAGATTTTATTAGCACCAAATTATTATGTTCAAACCG
TGATTTACCTCATGAAGCACTGGGTCAGTCTAATAACGTATTAAATTTAAATGATAGTAGCTTGGCGAGACGTGCCATTG
TTTTAAAACGACCTACCAAGCCTTATAAGTTTGAACAAGGCCAAAGTGAACAGTGGCGTGTGATCTCGCATCTTTCATTA
AATAGCTTGGCGCTTATGAAAGGGGATGCTGTTTCTCATGTTAAAGAGCTGCTGGCTTTATATAACTTACCGCAGTCAAA
AGAAAACTATTTAATTATAGAATCAATTAAAAAATTAGAATTTTCTCTTACCCATAAACTCGTAGATGGCAAACCATTTC
CAATGTTTGTAAGAGGAGTGAAAGCTGAATTACAAATTGATTCATCCGTATTTAGAGGGCATAGCTTATATATTTTTAGT
CAGTTATTAAGTCGTGTTTTTAATTTAAAGGTTCAAATTAATAGTTTTGTTGATTTGGTGGTTAAGGATTATTCATCTCA
GCAGGAGTTATACCAATGCACTCAGAACGTTGGTGGCAAGACTCTTCTGTAA