SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP013547
Component protein type	TssG
T6SS ID (Type)	T6SS01046 (Type i4b)
Strain	Acinetobacter baumannii ATCC 17978
Replicon	chromosome
Sequence	Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference	[1] Weber BS, Hennon SW, Wright MS, et al. Genetic Dissection of the Type VI Secretion System in Acinetobacter and Identification of a Novel Peptidoglycan Hydrolase, TagX, Required for Its Biogenesis. mBio. 2016 Oct 11;7(5). pii: e01253-16. doi: 10.1128/mBio.01253-16. PMID: 27729508

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	ACX60_RS11650
Coordinate (Strand)	2447166..2448164 (-)
NCBI ID	WP_000555491.1
RefSeq	NZ_CP012004
Uniprot ID	A0A7X4Z1N2_ACIBA
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	1.1e-65	20..311

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-332	MHSERWWQDSSVTAELFQRPKSFEFIQATRLLRHMPANDAALSWSDHFKFETSFNLNFPATEIESLELVDERVHLTNLIVGLTGIQGALPYTYTNKIKQAPRQQRAETKEFLSLFNHKLTSQYVESSITYHLPVRYEIENKNDYLDILHALNGYVRSQHQQQDLDEYFAEFSGLMQGQNNTVHALKTMLSCIFKHEITIKEFVQESFKLAGDQLTTLGGSQPSLLGINTFCGETIQQIDGKIEIQIGPLKRQQYLKFLPHQELSLKLKKIVETWCSPTLSIDLRLILDESEIQPVRLTQGQESGLGQGAFLMSRKPNTHNDETCYSLIGEQI

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9931	-	-

Protein sequence: 333 a.a.

						>T6CP013547 NZ_CP012004:c2448164-2447166 [Acinetobacter baumannii] [TssG]
MHSERWWQDSSVTAELFQRPKSFEFIQATRLLRHMPANDAALSWSDHFKFETSFNLNFPATEIESLELVDERVHLTNLIV
GLTGIQGALPYTYTNKIKQAPRQQRAETKEFLSLFNHKLTSQYVESSITYHLPVRYEIENKNDYLDILHALNGYVRSQHQ
QQDLDEYFAEFSGLMQGQNNTVHALKTMLSCIFKHEITIKEFVQESFKLAGDQLTTLGGSQPSLLGINTFCGETIQQIDG
KIEIQIGPLKRQQYLKFLPHQELSLKLKKIVETWCSPTLSIDLRLILDESEIQPVRLTQGQESGLGQGAFLMSRKPNTHN
DETCYSLIGEQI*					

Nucleotide sequence: 999 bp

						>T6CP013547 NZ_CP012004:c2448164-2447166 [Acinetobacter baumannii] [TssG]
ATGCACTCAGAACGTTGGTGGCAAGACTCTTCTGTAACGGCTGAGTTGTTTCAACGCCCTAAGTCTTTTGAGTTTATTCA
AGCAACACGTTTATTGCGTCATATGCCTGCCAATGACGCAGCTTTGTCATGGTCTGACCATTTTAAATTTGAGACCTCAT
TTAACTTAAATTTTCCGGCTACTGAAATTGAAAGTTTAGAGTTAGTAGATGAGCGTGTTCATTTAACAAACCTGATCGTT
GGTCTTACCGGTATACAAGGTGCATTACCTTATACATATACAAATAAAATTAAGCAGGCTCCAAGGCAACAACGCGCTGA
AACGAAAGAGTTTTTAAGCTTATTTAATCATAAGTTGACCAGTCAGTATGTAGAGTCAAGTATTACTTATCACTTGCCTG
TGCGCTATGAAATTGAAAATAAAAATGATTATTTGGATATTCTTCATGCATTGAATGGCTATGTTCGCTCACAACATCAG
CAACAAGACTTGGATGAATATTTCGCTGAATTTTCAGGCCTAATGCAAGGGCAAAATAATACGGTTCATGCTTTAAAGAC
GATGTTGAGTTGTATTTTTAAGCATGAAATTACAATTAAAGAGTTTGTACAGGAATCGTTTAAGTTAGCGGGTGATCAGC
TAACCACTTTGGGTGGAAGTCAACCGAGCTTACTTGGTATTAACACATTTTGTGGGGAAACCATTCAACAAATTGATGGA
AAAATTGAGATTCAAATAGGACCGCTTAAGCGTCAGCAATATTTAAAATTTTTACCTCATCAAGAGCTTAGCTTAAAGCT
CAAAAAAATCGTAGAAACCTGGTGCAGTCCAACTTTATCGATAGATTTAAGATTGATATTGGATGAGTCTGAAATACAAC
CTGTTCGCTTAACTCAAGGCCAAGAAAGTGGCTTAGGGCAAGGCGCTTTTTTAATGTCTCGTAAGCCTAATACACATAAC
GATGAAACATGTTATAGCCTTATAGGAGAGCAAATATGA					