Detailed information of component protein


Summary

Component ID T6CP013546
Component protein type TssM
T6SS ID (Type) T6SS01046 experimental (Type i4b)
Strain Acinetobacter baumannii ATCC 17978
Replicon chromosome
Sequence Protein sequence (1275 a.a.); Nucleotide sequence (3825 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACX60_RS11640
Coordinate (Strand) 2441902..2445726 (-)
NCBI ID WP_049594841.1
RefSeq NZ_CP012004
Uniprot ID A0A1E3M2K6_ACIBA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 7.3e-82 496..837
IcmF-related_N PF14331.8 7.8e-79 188..444
IcmF_C PF06744.14 3.8e-18 1107..1197
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-4 MHTI
Transmembrane helix 5-27 LGYLWQYITNPKAIIALSLFVAL
Outside 28-36 MSSYTSIPR
Transmembrane helix 37-59 HIFWALASAYALGLIAYGIYWLI
Inside 60-442 QRKKHAVQGEELAQAIEKDTQAEYGKNKDKEELQLISQQMKESIQLIRKSKLGDKKGNAALYELPWYMVIGNPAAGKSSAIYNSGLKFPFEETHQKMVSAGLSGTRNCDWFFSTEGILLDTAGRYSVYSEDHSEWLGFLNILKKNRSKAPVNGLILIVSIAELVSQSPEHSLKLAKNLRARIQDLTERLEVVVPVYLVFSKMDLIAGFTEFFEFYEAQEYNQAWGATLPYEQNSSHNAVDLFEKHYNILYDGLKGVSSTHLSRRHSQNISPSVMTFPLEFKTLKPALKSFIATLFEDNPYQFQPVFRGFYFTSALQEGVIESPMTEQIAQEFQLSQIAQSEVKDQLKTTPNHGYFLKGLFSDVILKDKDLVKQHVNTSKKRQR
Transmembrane helix 443-462 YIAFIGALAGVSIILGVWVW
Outside 463-1274 SYRNNQQLIAEVQADLNKVVQLEKSSGQQLSTQLEALLVLQRRLQQLDEFDENRPLKFSFGLYQGNELREKLKAEYLKGVKQIVLIPTQQNIAQYLQRVKNNEATLKANHTNVEIKQTAQTQQYLEPSDTNPQDAYNALKAYLMMSNPQYMDASHLSDQVTRFWRSWLDANKGQMPRADMIQEAEQILSYAMTLANDKQFPILDADSQLVDQTRQVLLSVIRGMPARDRVYNQIKMRAAVRFPALTVSQIVGDANKNIVLGSYALPGVFTQKAWNEYVEKAMEEAADKPTDTKDWVLNSRQSDDLTFSGSPEQIRKQLTALYKQEYIAEWRKFLSGIHYAKATQFAQQVKNIDVLGEPQNSPIRTLIERVAIETNWDNPVVQAELAAPQKGFIAWFKRKVLNHDDKQLANQAVTNAQGPISQEYQMFYQLVRKRDDQQGKSLLDEYMTNLALVRSKFNELKNAGEIGPNAMTLVKQTLNEQTSVFNQTQKIVDEKMAVGFSEIDQQLLQKLVVSPLTQAFESLITPTQDEINKLWVMQAYQPFTANLAKKYPFNSSASLQATSSEIGQILGENGSISRFVKESLDPFVIRRGYTLTSKTWKDLGISLNPQFVMNFQRYVAPTNGMATGELNSQAPAAPATNQSNFQFYPIQNPQLLSYTVDIDGQRMTYENGVQQWVNFIWPNQGSIPGARITAVDLQGQTHTIFDEPGEYGINRLIDSAQRKEQNGGFEMLWRSKTDPSLFVKMNFRLISSNSGSIGSSRGYSGMQLVDKVTADKAARVVSAQQAPAQAAAPAKTENPVSALAQPAAGVKP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9546 - -


  Protein sequence: 1275 a.a.    

>T6CP013546 NZ_CP012004:c2445726-2441902 [Acinetobacter baumannii] [TssM]
MHTILGYLWQYITNPKAIIALSLFVALMSSYTSIPRHIFWALASAYALGLIAYGIYWLIQRKKHAVQGEELAQAIEKDTQ
AEYGKNKDKEELQLISQQMKESIQLIRKSKLGDKKGNAALYELPWYMVIGNPAAGKSSAIYNSGLKFPFEETHQKMVSAG
LSGTRNCDWFFSTEGILLDTAGRYSVYSEDHSEWLGFLNILKKNRSKAPVNGLILIVSIAELVSQSPEHSLKLAKNLRAR
IQDLTERLEVVVPVYLVFSKMDLIAGFTEFFEFYEAQEYNQAWGATLPYEQNSSHNAVDLFEKHYNILYDGLKGVSSTHL
SRRHSQNISPSVMTFPLEFKTLKPALKSFIATLFEDNPYQFQPVFRGFYFTSALQEGVIESPMTEQIAQEFQLSQIAQSE
VKDQLKTTPNHGYFLKGLFSDVILKDKDLVKQHVNTSKKRQRYIAFIGALAGVSIILGVWVWSYRNNQQLIAEVQADLNK
VVQLEKSSGQQLSTQLEALLVLQRRLQQLDEFDENRPLKFSFGLYQGNELREKLKAEYLKGVKQIVLIPTQQNIAQYLQR
VKNNEATLKANHTNVEIKQTAQTQQYLEPSDTNPQDAYNALKAYLMMSNPQYMDASHLSDQVTRFWRSWLDANKGQMPRA
DMIQEAEQILSYAMTLANDKQFPILDADSQLVDQTRQVLLSVIRGMPARDRVYNQIKMRAAVRFPALTVSQIVGDANKNI
VLGSYALPGVFTQKAWNEYVEKAMEEAADKPTDTKDWVLNSRQSDDLTFSGSPEQIRKQLTALYKQEYIAEWRKFLSGIH
YAKATQFAQQVKNIDVLGEPQNSPIRTLIERVAIETNWDNPVVQAELAAPQKGFIAWFKRKVLNHDDKQLANQAVTNAQG
PISQEYQMFYQLVRKRDDQQGKSLLDEYMTNLALVRSKFNELKNAGEIGPNAMTLVKQTLNEQTSVFNQTQKIVDEKMAV
GFSEIDQQLLQKLVVSPLTQAFESLITPTQDEINKLWVMQAYQPFTANLAKKYPFNSSASLQATSSEIGQILGENGSISR
FVKESLDPFVIRRGYTLTSKTWKDLGISLNPQFVMNFQRYVAPTNGMATGELNSQAPAAPATNQSNFQFYPIQNPQLLSY
TVDIDGQRMTYENGVQQWVNFIWPNQGSIPGARITAVDLQGQTHTIFDEPGEYGINRLIDSAQRKEQNGGFEMLWRSKTD
PSLFVKMNFRLISSNSGSIGSSRGYSGMQLVDKVTADKAARVVSAQQAPAQAAAPAKTENPVSALAQPAAGVKP*

  Nucleotide sequence: 3825 bp    

>T6CP013546 NZ_CP012004:c2445726-2441902 [Acinetobacter baumannii] [TssM]
ATGCATACAATTTTAGGCTACTTGTGGCAGTACATCACGAATCCTAAAGCAATTATCGCCTTGTCATTGTTCGTGGCATT
GATGTCTTCCTATACTTCAATTCCTCGCCATATATTTTGGGCTTTAGCATCTGCATATGCTTTAGGGCTCATCGCTTATG
GAATTTATTGGCTAATTCAGCGTAAAAAGCATGCTGTTCAAGGTGAAGAGCTTGCGCAAGCGATTGAAAAGGATACCCAA
GCAGAGTACGGCAAAAATAAAGATAAAGAAGAGCTGCAACTTATTAGCCAACAAATGAAAGAATCTATTCAATTGATTCG
TAAGTCAAAGTTAGGCGATAAAAAGGGGAACGCAGCACTATATGAGTTGCCATGGTATATGGTCATTGGTAACCCGGCTG
CTGGTAAAAGTTCTGCGATCTATAATTCCGGTTTAAAGTTTCCTTTTGAAGAAACCCATCAAAAAATGGTTTCGGCTGGT
TTAAGCGGTACGCGTAATTGTGACTGGTTTTTTTCAACTGAGGGTATTTTACTCGACACCGCTGGACGTTATTCAGTCTA
TAGCGAAGATCACTCTGAATGGTTAGGCTTTTTAAATATCTTAAAGAAGAACCGTTCGAAGGCTCCAGTAAATGGTTTAA
TTCTTATTGTTAGTATTGCTGAGCTTGTTAGTCAGAGTCCAGAACACTCATTAAAGCTTGCGAAAAATTTACGCGCTCGT
ATTCAGGATTTAACTGAACGTTTAGAAGTGGTTGTACCCGTATATCTAGTCTTTTCAAAAATGGATTTGATCGCGGGTTT
TACTGAATTTTTCGAATTCTATGAAGCACAAGAATATAATCAGGCGTGGGGTGCAACACTACCATATGAGCAAAACTCTT
CTCATAATGCTGTAGATCTTTTTGAGAAACACTACAATATTCTTTATGACGGTTTAAAAGGGGTCAGTTCAACTCATCTT
AGCCGTCGACATTCTCAAAATATCTCACCTAGTGTGATGACTTTCCCATTAGAATTTAAGACATTAAAACCTGCATTAAA
AAGTTTTATTGCGACACTGTTTGAAGATAACCCTTACCAGTTCCAACCAGTTTTCCGTGGGTTTTATTTCACGAGTGCTT
TGCAAGAAGGCGTAATAGAAAGTCCAATGACTGAGCAAATTGCACAGGAATTCCAGCTTTCCCAAATTGCTCAAAGTGAA
GTAAAAGATCAACTAAAAACAACGCCTAACCATGGTTATTTCTTAAAAGGCTTGTTTTCAGATGTCATTTTAAAAGATAA
AGATCTGGTTAAACAGCATGTCAATACAAGCAAAAAGCGTCAGCGTTATATTGCATTTATTGGTGCTTTAGCTGGCGTAT
CCATTATTCTAGGTGTGTGGGTTTGGTCATATCGTAACAATCAACAACTTATTGCTGAAGTTCAAGCTGATTTAAATAAA
GTTGTTCAATTGGAAAAGAGTTCAGGTCAACAATTGTCGACTCAATTAGAGGCCTTACTTGTCTTGCAAAGACGTCTACA
ACAGTTAGACGAATTTGATGAAAATAGACCACTAAAATTTAGTTTTGGTTTATATCAAGGTAATGAGCTACGTGAAAAAT
TAAAAGCTGAATATTTAAAAGGTGTTAAGCAAATTGTTTTGATACCTACACAGCAAAATATTGCTCAGTATTTGCAACGT
GTAAAAAATAACGAAGCAACTTTAAAAGCAAATCATACCAATGTTGAGATCAAGCAAACTGCTCAAACTCAGCAATATTT
AGAGCCTTCGGATACCAACCCTCAAGATGCTTATAATGCTTTAAAAGCATATTTAATGATGAGCAATCCACAGTATATGG
ATGCAAGTCACTTAAGTGATCAGGTAACGCGTTTCTGGCGTTCTTGGCTTGATGCCAATAAAGGGCAGATGCCACGTGCA
GATATGATCCAAGAAGCTGAGCAGATCTTATCTTATGCAATGACATTGGCAAATGATAAACAATTCCCGATCTTGGATGC
TGACTCTCAACTCGTGGATCAGACACGTCAAGTATTGCTCTCTGTTATTAGAGGTATGCCAGCACGTGACCGTGTTTATA
ATCAAATTAAAATGCGTGCTGCTGTGCGCTTTCCAGCTTTAACTGTAAGCCAGATTGTAGGTGATGCAAATAAAAATATT
GTATTGGGTAGTTATGCATTACCAGGGGTATTTACTCAAAAAGCTTGGAACGAGTATGTAGAAAAAGCAATGGAGGAAGC
AGCAGACAAACCTACGGATACTAAAGACTGGGTGCTTAATAGCCGTCAATCTGATGATTTAACTTTTTCTGGTAGTCCAG
AGCAAATCAGAAAGCAGCTTACTGCATTGTATAAACAAGAATATATTGCAGAGTGGAGAAAATTCTTAAGTGGTATTCAC
TATGCAAAAGCAACTCAGTTTGCTCAGCAAGTTAAAAATATTGATGTATTGGGCGAACCACAAAATTCACCAATTCGCAC
ACTTATTGAACGCGTAGCCATTGAAACAAATTGGGATAATCCGGTCGTTCAAGCCGAGTTAGCAGCACCTCAAAAAGGAT
TTATTGCATGGTTTAAACGTAAGGTTTTAAACCATGATGATAAACAATTAGCAAATCAGGCTGTAACGAATGCTCAAGGG
CCTATTTCTCAAGAATATCAAATGTTCTATCAATTGGTTCGTAAACGTGATGATCAGCAAGGTAAATCTTTGCTTGATGA
ATATATGACGAATCTTGCCTTAGTACGTAGTAAGTTTAATGAACTTAAGAATGCGGGTGAGATCGGACCGAATGCGATGA
CATTGGTTAAGCAAACTTTAAATGAGCAGACATCGGTATTTAACCAGACTCAAAAAATTGTAGATGAAAAGATGGCGGTT
GGTTTCAGTGAAATTGATCAGCAACTTCTACAAAAATTAGTGGTGAGTCCACTTACCCAAGCCTTTGAAAGTTTAATTAC
ACCTACTCAAGATGAAATTAATAAGCTATGGGTAATGCAAGCCTATCAACCATTTACTGCAAATCTTGCTAAGAAATATC
CATTTAACTCATCAGCTTCTTTACAAGCAACAAGTAGTGAAATTGGACAAATTCTTGGTGAAAACGGCAGTATTTCCCGT
TTTGTTAAAGAGAGTTTAGATCCGTTTGTTATCCGCCGTGGTTATACTTTAACTTCAAAAACATGGAAAGATTTGGGGAT
TAGTTTAAACCCACAATTTGTTATGAACTTCCAACGCTATGTTGCACCTACAAATGGAATGGCAACAGGTGAGTTAAATA
GCCAAGCACCAGCTGCTCCGGCAACCAATCAGTCTAACTTCCAGTTCTACCCAATTCAAAACCCGCAATTACTTTCATAT
ACCGTTGATATTGATGGTCAGCGTATGACTTATGAAAATGGGGTGCAGCAATGGGTTAACTTTATTTGGCCAAATCAAGG
CAGTATTCCGGGTGCTCGTATTACAGCTGTAGATTTACAAGGTCAAACACATACCATTTTTGATGAACCAGGCGAATACG
GGATTAACCGTTTAATCGATAGTGCACAGCGTAAAGAGCAAAACGGTGGTTTTGAAATGCTTTGGCGCAGTAAGACAGAT
CCATCACTCTTTGTGAAAATGAACTTCCGTCTTATTAGTAGTAATTCAGGAAGTATCGGTTCAAGCCGTGGCTACTCTGG
TATGCAACTGGTTGACAAAGTAACTGCGGATAAGGCTGCTCGCGTTGTATCCGCACAGCAAGCACCAGCTCAGGCAGCTG
CTCCTGCCAAAACTGAAAATCCAGTTTCTGCACTAGCACAACCTGCTGCGGGAGTTAAGCCATGA