Detailed information of component protein


Summary

Component ID T6CP013545
Component protein type TssH
T6SS ID (Type) T6SS01046 experimental (Type i4b)
Strain Acinetobacter baumannii ATCC 17978
Replicon chromosome
Sequence Protein sequence (894 a.a.); Nucleotide sequence (2682 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACX60_RS11620
Coordinate (Strand) 2436954..2439635 (-)
NCBI ID WP_109426774.1
RefSeq NZ_CP012004
Uniprot ID UPI00030CD185
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 3.1e-41 606..774
AAA_lid_9 PF17871.3 1.3e-24 370..462
AAA PF00004.31 1.2e-11 230..343
ClpB_D2-small PF10431.11 2.3e-11 780..850
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-893 MMSSLKILITKLSTAARTALEKSANACVLQQNYEIEIEHLFLELLNQPLENDLKILLKKYKISADALADDLKETISQLPKGNTRTPIFAKSIVRLFEQAWLLASAEQNPVIRSGHLLVALLTAPDLYQIATRASSLFDLFPIDSMKHKFLEICEKSVEQQEESKKSSQADELEQAATPTAKTQKTPALDQYTINLTEKAKNGGIDPVIGREYEIRLMLDILMRRRQNNPILTGEPGVGKTAVVEGLALKIAQGLVPEALKNVHLHVLDMGLLQAGASVKGEFENRLKQVIQEVQSSAHPIILFIDEAHTLIGAGGQAGQNDAANLLKPALARGELRTIAATTWAEYKQYFEKDAALSRRFQVVKVEEPTEEVAVDMLRAMIPVMQKHFNLQIDDEAIVTAVHASHRYISGRQLPDKAVSVLDTAAARVALTQNAQPVKLDQLKAQEHNLKLEQQILENEHRQIPIHHERLENLKNQLESLQSEIQETQEQWQKELELVRKIQELEAQSHSNESEAYDQINLIRKDLADIQGQQPLVFERVNSQIINEIISDWTGIPVGKMVNDEIKQILTLEDKLGERVMGQDYALTQLVQGIKTSKAKLEDPNKPQGVFLLVGPSGVGKTETALALANELYGGEQHLITINMSEYQEAHTVSSLKGAPPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVIDFKNTTILLTSNTGSSAIMQACLNQPVEKWPTAEDLIEHLKPSLYKQFKPAFLGRMRVVPYFPLHDDLLVRIIKHKLGKITARIEKQYGTEVQYSDDLVELLLSRCTEVDSGARNVDNILNSTVLPALATEILVALADQKLPKLIMIDAKDDEIQYLLDPVAKPAKKRTSKKLKSEV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9493 - -


  Protein sequence: 894 a.a.    

>T6CP013545 NZ_CP012004:c2439635-2436954 [Acinetobacter baumannii] [TssH]
MMSSLKILITKLSTAARTALEKSANACVLQQNYEIEIEHLFLELLNQPLENDLKILLKKYKISADALADDLKETISQLPK
GNTRTPIFAKSIVRLFEQAWLLASAEQNPVIRSGHLLVALLTAPDLYQIATRASSLFDLFPIDSMKHKFLEICEKSVEQQ
EESKKSSQADELEQAATPTAKTQKTPALDQYTINLTEKAKNGGIDPVIGREYEIRLMLDILMRRRQNNPILTGEPGVGKT
AVVEGLALKIAQGLVPEALKNVHLHVLDMGLLQAGASVKGEFENRLKQVIQEVQSSAHPIILFIDEAHTLIGAGGQAGQN
DAANLLKPALARGELRTIAATTWAEYKQYFEKDAALSRRFQVVKVEEPTEEVAVDMLRAMIPVMQKHFNLQIDDEAIVTA
VHASHRYISGRQLPDKAVSVLDTAAARVALTQNAQPVKLDQLKAQEHNLKLEQQILENEHRQIPIHHERLENLKNQLESL
QSEIQETQEQWQKELELVRKIQELEAQSHSNESEAYDQINLIRKDLADIQGQQPLVFERVNSQIINEIISDWTGIPVGKM
VNDEIKQILTLEDKLGERVMGQDYALTQLVQGIKTSKAKLEDPNKPQGVFLLVGPSGVGKTETALALANELYGGEQHLIT
INMSEYQEAHTVSSLKGAPPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVIDFKN
TTILLTSNTGSSAIMQACLNQPVEKWPTAEDLIEHLKPSLYKQFKPAFLGRMRVVPYFPLHDDLLVRIIKHKLGKITARI
EKQYGTEVQYSDDLVELLLSRCTEVDSGARNVDNILNSTVLPALATEILVALADQKLPKLIMIDAKDDEIQYLLDPVAKP
AKKRTSKKLKSEV*

  Nucleotide sequence: 2682 bp    

>T6CP013545 NZ_CP012004:c2439635-2436954 [Acinetobacter baumannii] [TssH]
ATGATGAGTAGTTTAAAAATTTTAATTACAAAACTTTCTACAGCTGCACGCACCGCTTTAGAAAAATCTGCTAATGCTTG
TGTTCTTCAGCAAAACTACGAAATTGAAATTGAACATTTATTTTTAGAGTTACTTAATCAGCCTTTAGAAAACGATTTAA
AAATTTTATTAAAAAAATATAAAATCTCAGCAGATGCTTTAGCAGATGATTTAAAAGAAACAATTTCTCAATTACCAAAA
GGTAATACACGTACTCCAATTTTTGCTAAATCAATTGTTCGTTTATTTGAACAAGCTTGGTTATTGGCTTCAGCAGAACA
AAATCCTGTCATTCGTAGTGGTCATTTACTGGTTGCATTATTAACTGCACCTGACCTCTATCAAATTGCAACGAGAGCTT
CGAGTTTATTTGATCTTTTCCCGATAGACTCAATGAAACATAAGTTTCTTGAAATTTGTGAAAAAAGTGTAGAACAACAA
GAAGAATCAAAAAAATCTTCACAAGCAGATGAATTAGAACAAGCCGCGACTCCAACTGCAAAAACTCAAAAAACACCTGC
TTTAGATCAATATACAATTAATTTAACTGAAAAAGCGAAGAATGGCGGGATTGACCCTGTTATTGGGCGTGAATATGAAA
TTCGTTTGATGCTCGATATTTTAATGCGTAGACGTCAGAACAACCCAATTTTAACTGGTGAGCCAGGTGTAGGTAAAACA
GCTGTAGTTGAAGGGTTGGCTTTAAAAATTGCTCAAGGTTTAGTTCCTGAAGCATTAAAAAATGTTCATTTGCACGTTTT
AGATATGGGACTTTTGCAAGCTGGGGCAAGTGTTAAAGGTGAATTTGAAAACCGTTTAAAGCAAGTTATTCAAGAAGTCC
AATCATCGGCTCATCCTATTATTTTATTTATTGATGAAGCACATACGCTTATTGGAGCTGGTGGCCAAGCGGGGCAAAAC
GATGCTGCCAATCTTTTAAAACCTGCACTTGCACGTGGCGAGTTACGTACTATTGCTGCAACGACATGGGCAGAATATAA
ACAGTATTTTGAGAAAGATGCTGCATTGAGCCGCCGTTTTCAGGTGGTAAAGGTTGAAGAACCGACCGAAGAAGTTGCTG
TAGATATGTTACGTGCAATGATTCCCGTAATGCAAAAGCACTTTAATTTACAAATTGATGATGAAGCAATTGTAACGGCT
GTACATGCCTCTCATCGCTATATTAGTGGTCGTCAACTCCCAGACAAAGCAGTAAGTGTTCTTGATACTGCGGCAGCGCG
TGTAGCTTTGACCCAAAATGCACAGCCAGTCAAACTTGATCAATTAAAAGCACAAGAACATAACTTAAAGCTTGAGCAAC
AAATTTTGGAAAATGAACACCGTCAAATTCCAATACATCATGAAAGATTAGAAAATCTGAAAAACCAACTAGAGTCATTA
CAAAGTGAGATCCAAGAGACTCAGGAACAATGGCAAAAAGAATTAGAGCTAGTTCGTAAAATTCAGGAATTAGAAGCGCA
GAGCCATTCTAATGAGTCTGAAGCCTACGATCAGATTAATTTAATACGCAAAGACCTTGCTGATATTCAGGGACAACAGC
CGTTAGTTTTTGAGCGAGTAAACTCTCAGATCATCAATGAAATTATTTCTGATTGGACAGGTATTCCTGTTGGGAAAATG
GTCAATGATGAAATTAAGCAGATTTTAACGCTTGAAGATAAATTAGGTGAGCGTGTAATGGGGCAAGATTATGCACTTAC
ACAATTAGTTCAAGGGATTAAAACTTCAAAAGCTAAATTAGAAGATCCAAATAAACCTCAAGGGGTGTTCCTTTTAGTCG
GGCCTAGTGGGGTTGGTAAAACTGAAACTGCTTTAGCCTTAGCTAATGAGTTATATGGCGGTGAACAGCATTTAATCACG
ATTAATATGTCTGAGTATCAAGAAGCACATACTGTCTCTTCGCTTAAAGGTGCTCCTCCAGGCTATGTTGGCTATGGTCA
GGGTGGGGTTTTAACTGAAGCTGTACGCCGTAATCCTTATAGTGTTGTGTTACTTGACGAAATTGAAAAAGCACATAGCG
ATGTTCAGGAGTTGTTCTATCAAGTATTTGATAAAGGCACTTTAGAGGATGGTGAAGGGCGCGTTATTGATTTTAAAAAC
ACGACAATCTTATTAACTTCAAATACAGGCTCGAGTGCAATTATGCAGGCATGTTTAAATCAGCCTGTAGAAAAATGGCC
TACCGCAGAAGATTTAATCGAACATTTAAAGCCGAGTTTATATAAACAGTTTAAGCCAGCCTTCTTAGGGCGCATGAGAG
TTGTGCCATATTTCCCATTGCATGATGATTTATTGGTTCGAATTATTAAACATAAATTGGGCAAAATTACTGCTCGAATT
GAAAAACAATATGGAACGGAAGTTCAATATTCAGATGACTTGGTTGAATTGCTACTCAGCCGTTGTACTGAAGTGGATAG
TGGCGCCCGTAATGTTGATAACATCTTAAATTCTACAGTTTTACCTGCTTTGGCAACTGAAATTTTAGTGGCGTTGGCAG
ATCAAAAATTGCCGAAATTGATCATGATTGATGCAAAAGATGACGAGATCCAATATTTACTAGATCCTGTGGCGAAGCCT
GCTAAAAAACGGACTAGTAAAAAGTTGAAATCAGAAGTTTAA