SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP013453
Component protein type	TssA
T6SS ID (Type)	T6SS01037 (Type i1)
Strain	Dickeya zeae EC1
Replicon	chromosome
Sequence	Protein sequence (478 a.a.); Nucleotide sequence (1434 bp)
Reference	[1] Lv M, Hu M, Li P, et al. A two-component regulatory system VfmIH modulates multiple virulence traits in Dickeya zeae. Mol Microbiol. 2019 Jun;111(6):1493-1509. doi: 10.1111/mmi.14233. Epub 2019 Mar 28. PMID: 30825339

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	W909_RS06425
Coordinate (Strand)	1405837..1407270 (+)
NCBI ID	WP_016943518.1
RefSeq	NZ_CP006929
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
VasL	PF12486.10	5.4e-49	324..471
ImpA_N	PF06812.14	1.2e-23	5..112

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 478 a.a.

						>T6CP013453 NZ_CP006929:1405837-1407270 [Dickeya zeae EC1] [TssA]
MQDAQQALKVGRDPRMLPEYEALRAEINKLSHASRPEVDWMRVHDMATAIFEKQGVDLQTAIYFTLARSRLAGLNGFTEG
CEFLANLIVTQWENFWPPVHQERARIEVLDWFIARISEVIRQYAISHEHKRLVYRCERALQLMSEKLHNSGLSRIPRVEN
LLHFIEGYTHLFDETEIVIVSDDQTLKKQQDMQIPPMVFFQSDMEPGGMASAAAAAQPALPSGSILVGREKGQMKPTVLK
IETHHKPKPGWFWFACGVLSCALPVAAITGWQYWQNQKAEALALLQQPAYTLPAAPDHNDIRRVRIVLGEQKLQSMEGEL
INRYQAQLEQVKNASSFYLYQYGEGLKGVMQQLYPDSLAVKEMDRQWQIALDRQQGDKPPRVSGYELARAEVGDTLQQLL
DLEKQRRTVTISYLKSQLYDIQKDLSSDVPFGIRLRTLEARKAARQSLTPAELRGMEDELRAFTIRLYRLQQGESGR*					

Nucleotide sequence: 1434 bp

						>T6CP013453 NZ_CP006929:1405837-1407270 [Dickeya zeae EC1] [TssA]
ATGCAAGATGCACAACAGGCCCTGAAAGTGGGCCGTGATCCACGGATGCTGCCTGAGTACGAGGCGTTACGCGCGGAAAT
TAACAAGCTAAGCCATGCATCCCGCCCGGAAGTGGACTGGATGCGGGTGCACGATATGGCGACCGCGATTTTTGAAAAGC
AGGGTGTCGACCTGCAAACCGCTATCTATTTCACCCTGGCGCGCTCGCGTCTGGCCGGGTTGAACGGCTTTACCGAAGGG
TGCGAGTTTCTCGCCAACCTGATCGTGACCCAGTGGGAGAATTTCTGGCCGCCGGTGCATCAGGAGCGGGCGCGTATCGA
AGTGCTGGACTGGTTTATCGCCCGCATCAGCGAGGTGATCCGCCAGTACGCCATCAGCCACGAACATAAGCGGCTGGTGT
ATCGCTGCGAGCGTGCCCTGCAACTGATGAGCGAAAAGCTGCATAACTCGGGCCTGAGCCGCATCCCGCGGGTGGAAAAC
CTGCTGCATTTTATCGAAGGCTATACCCATCTGTTCGATGAAACCGAGATTGTGATTGTGTCTGACGATCAGACACTGAA
GAAACAGCAGGACATGCAGATCCCGCCGATGGTGTTCTTCCAGTCTGATATGGAGCCGGGCGGTATGGCGTCTGCGGCGG
CAGCAGCCCAGCCGGCGCTGCCGTCGGGCAGTATTCTGGTCGGGCGGGAGAAAGGGCAGATGAAACCTACCGTATTGAAA
ATTGAAACGCACCATAAGCCGAAACCGGGCTGGTTCTGGTTTGCCTGCGGTGTGCTGAGCTGTGCCCTGCCGGTAGCGGC
CATCACCGGCTGGCAGTACTGGCAGAATCAGAAAGCCGAGGCGCTGGCGCTGTTACAGCAACCGGCGTACACACTGCCAG
CGGCACCCGATCACAACGATATTCGTCGGGTACGCATCGTGCTGGGCGAGCAGAAGCTGCAAAGCATGGAAGGGGAACTG
ATCAACCGCTATCAGGCGCAACTGGAACAGGTGAAAAACGCCTCGTCGTTTTACCTCTACCAGTATGGCGAGGGGCTTAA
AGGCGTGATGCAACAGCTCTACCCCGATTCGCTGGCGGTGAAAGAAATGGACCGGCAGTGGCAGATAGCCCTTGATCGTC
AGCAAGGTGACAAGCCGCCGCGTGTCAGCGGTTACGAGCTGGCGCGTGCCGAAGTGGGCGATACCCTGCAACAGTTGCTG
GATTTGGAAAAACAGCGCCGGACGGTCACCATTTCGTACCTGAAATCACAACTTTATGATATTCAAAAAGATTTGTCCTC
CGACGTGCCTTTTGGCATTCGCCTGCGGACGCTGGAGGCGCGCAAAGCCGCCCGTCAGTCGCTGACCCCGGCGGAATTAC
GCGGTATGGAAGACGAACTGCGTGCTTTCACCATTCGGCTGTACCGTTTACAGCAAGGCGAGAGCGGCAGGTAA					